Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09076 ATGGAGGTTGAGAAAGCAGATACAGTTGAGAGGTTGATTGAGTTGGTGAATGAGATATCGTCGATCTCGGATTACAGGTCGGCGGTGAAGAAAGATTACTGCAACTTGGCGCGTAGGTTGAAGCTGTTGACTCCATTGTTTGAAGAGATTAGGGACAGTAGAGAGCCAATCCCTGAGGAAACTTCAAAGGCCATGCTTTCCTTGAAGCAAGCTATGGAATCGGCTAAGCAACTTCTCAGATTCGGGAGTGAAGGCAGCAAGATTTACATGGTCCTGGAGAGGGACCAAATTATGAAAAAATTCCACGAGGTGACTGCTCAGTTGGAACAAGCATTGGGTGGAATTTCCTATGATAAACTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTTTTGCCCAGTTCAAAAGAGCCAAAGGAAGGGTTGATGCACCTGATGTTGAGTTGTATGAGGATCTCTCGTCTGTTTACAACAAGAGCAGTGATGCAGCTACAGATCCAGCTGTTTTACAGAGATTAGCTGAAAAATTGCAATTGATTGGAATAGCTGATCTTACACAGGAATCAGTAGCTTTGCATGAGATGGTGGCTGCCAGTGATGGGGATCCTGGGGCAAGCATTGAGAAGATGTCAATGCTATTGAAGAAGATAAAAGATTATGCCCAAACAGAAAATCTAAACATGGATGATAATGTAGAGGGAAACAGCCTTTCTTCAAGTTGCTGTAAACAAGGTGCAAATGATAAGAATCACCAGTCCCATGTAATCCCTGATGATTTTCGATGTCCAATTTCCCTAGAATTGATGAAGGATCCTGTCATTGTATCAACAGGACAGACTTATGAGCGTTCCTGTATAGAGAAGTGGTTGGAAGCAGGGCATGGGACATGCCCAAAAACACAGCAGAGCCTCTCTAGTACTGTTCTCACACCCAACTATGTCTTACGAAGCCTCATAACACAATGGTGTGAAGCCAATGGCATAGAACCACCAAAGCGACCCAGCAGTTTTCGACCTAGTAAATCAGCATCTGCCTGCTCACCAGCTGAGCAAAGTGAGATTGAGGATCTTCTTTGGAAACTCACATCTGGCAATCCTGAAGACCAGAGATCAGCTGCTGGTGAGATCCGCCTTCTTGCAAAGCGTAATGCAGATAACCGTGTGGCCATTGCTGAAGCTGGTGCAATACCTCTTCTTGTTGGTCTTCTCTGTATGCCTGACTCCCGCATTCAAGAGCATGCTGTTACTGCACTTCTGAATCTTTCCATATGTGAAAATAACAAAGGAAGTATCATATCTTCTGGGGCAGTTCCAGGTATAGTTCATGTACTCAAGAAGGGAAGCATGGAAGCTCGGGAAAATGCAGCTGCAACTCTTTTTAGCCTTTCAGTTATAGATGAAAATAAGGTTACAATTGGTTCCTCAGGAGCCATACCACCATTAGTGATGCTGCTGAGCGAGGGTACTCAAAGGGGTAAGAAAGATGCTGCAACGGCACTCTTCAATTTGTGCATTTACCAGGGTAACAAGGGAAAGGCGGTGAGGGCTGGTGTTGTTCCCATACTGATGAGACTGCTGATGGAACCTATTGGGGGAATGGTGGATGAAGCGTTAGCCATTTTGGCAATATTGGCTAGCCATCCTGATGGGAAAATTGCCATTGGCACTGCAGAGGCAGTGCCTGTTTTGGTAGAGGTTATTGGGAATGGATCTCCAAGGAACAAAGAGAACGCAGCTGCTGTGTTGGTGCACCTTTGTTCTGGAGATCAACAATATCTAGCTCAGTCCCGGGATTTAGGGGTGATGGGTCCATTGTTGGAATTAGCTCAAAATGGCACTGACAGAGGCAAAAGAAAGGCTGCACAATTGCTTGAGCGAATGAACAGGTTCCTTGAACAGCAGGAGGAAGTTCAAACACAAACTGAACTTCAAGCTATGAACCTGGATACGCCACTGCCTTCTATTACTAACGTTAATAATAGCTGA 1992 0.4488 MEVEKADTVERLIELVNEISSISDYRSAVKKDYCNLARRLKLLTPLFEEIRDSREPIPEETSKAMLSLKQAMESAKQLLRFGSEGSKIYMVLERDQIMKKFHEVTAQLEQALGGISYDKLDISDEVKEQVELVFAQFKRAKGRVDAPDVELYEDLSSVYNKSSDAATDPAVLQRLAEKLQLIGIADLTQESVALHEMVAASDGDPGASIEKMSMLLKKIKDYAQTENLNMDDNVEGNSLSSSCCKQGANDKNHQSHVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQSLSSTVLTPNYVLRSLITQWCEANGIEPPKRPSSFRPSKSASACSPAEQSEIEDLLWKLTSGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLCMPDSRIQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVMLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPILMRLLMEPIGGMVDEALAILAILASHPDGKIAIGTAEAVPVLVEVIGNGSPRNKENAAAVLVHLCSGDQQYLAQSRDLGVMGPLLELAQNGTDRGKRKAAQLLERMNRFLEQQEEVQTQTELQAMNLDTPLPSITNVNNS. 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09076 663 Gene3D - 532 651 IPR011989 -
Seca4g09076 663 Gene3D - 348 531 IPR011989 -
Seca4g09076 663 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Seca4g09076 663 FunFam RING-type E3 ubiquitin transferase 532 649 - -
Seca4g09076 663 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Seca4g09076 663 Gene3D - 3 117 IPR036537 GO:0007166
Seca4g09076 663 FunFam RING-type E3 ubiquitin transferase 258 331 - -
Seca4g09076 663 SUPERFAMILY RING/U-box 250 334 - -
Seca4g09076 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 331 IPR013083 -
Seca4g09076 663 PANTHER U BOX DOMAIN-CONTAINING 28 632 - -
Seca4g09076 663 FunFam RING-type E3 ubiquitin transferase 341 492 - -
Seca4g09076 663 CDD RING-Ubox_PUB 259 311 IPR045210 -
Seca4g09076 663 Coils Coil 622 642 - -
Seca4g09076 663 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Seca4g09076 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Seca4g09076 663 SMART arm_5 467 507 IPR000225 GO:0005515
Seca4g09076 663 SMART arm_5 508 548 IPR000225 GO:0005515
Seca4g09076 663 SMART arm_5 426 466 IPR000225 GO:0005515
Seca4g09076 663 SMART arm_5 385 425 IPR000225 GO:0005515
Seca4g09076 663 SMART arm_5 591 631 IPR000225 GO:0005515
Seca4g09076 663 SMART arm_5 549 589 IPR000225 GO:0005515
Seca4g09076 663 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Seca4g09076 663 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515
Seca4g09076 663 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Seca4g09076 663 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Seca4g09076 663 CDD MLKL_NTD 12 138 - -
Seca4g09076 663 SUPERFAMILY ARM repeat 356 634 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09076 Seca-Chr4 215692386 215697333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09076 1 639 U-box Gene Family AT3G46510 71.049 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09076 - - pcin:129314694 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09076 4 215692386 215697333 Seca4g09076 4 215692386 215697333 ECH