LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g09067	ATGGAACTTTTGAACCCTTCCCACCCTCCTCATCCCCACCATGCACCGCCACCCTCCTCGATTCTGCGCTTTCCCTTTCACGCGGTTCCCTCTTCTTCTCAATCTCAGATTCACTTACCCCAACCTATGGAACATTCTAACCATAAGGTTCATGTAGCCGTTGGGAAATCGCTTGAGAAAGCCGCTTCCTTGCTTCGATGGACTTTCAACCAGTTTCCCAACACAGAAATTGTCATTATTCATGCCTATCAACCTTCTCAAATGATCCCCACTTTATTGGGGAAAATGCCAGCATCCCAGGCTAGTCCTGAAGTGGTGTCTGCTTTTCGAAGAGAGGAAAAAGAACAGACCATGAGGGTTGTAGACAAGTACTTGAGCATTTGCCGCGCAGCTAGGGTTAAGGCAAGTAGTATTGTAACTGAAGCTGACCAAGTCCAAAAAGGAATTGTTGATATGGTTATTAGGCATAACATTAGGAACCTTGTAATTGGAGCAGCAACGGAAAATTGGATGAAAGTGAAAAAGAATTCCGGTAAAGCAAATTACACTGCCAAAAATGCCCCACCATTCTGTGAAATATGGTTTATCTATAAAGGTAAACACATTTGGACAAGAGAGGCTTCTGAAGCACCATGTTCTTTGTCTTCATGTGCTCAACCTGGGATTGCATCCACGGAAAGCTTGAGATGTAGATCTTTTCAATATGGTAAGAATGAATTACCCGACTCAGAATATCTTCAGCCAAATTCTGCAAGAACTACAATATGTTCTGGAATTAGAAGTTGGGCTCAGGGTGACATCATGGAAACTGAAGCCACTTTTTCATCCAAATCATCCAGTTGTGGCAGTCATTGCTCCTCCCAAAATTCTGCTGGGGGTTATTTAGATCCATATTTAGAGGGCATGGAAGAAAGAGTTAGCAGTCAACTTATTGAAACCAAAAGAGAAGTTGAGGCAGCAACAGATGAGGCCTTTGCAGAGCGATTAAAGTGCAAGAGGTTGGAAGTCAAAGCCATGGAGGCCATGAGGAAGGTTAGTTTGTTTGAATCTGCCCATGCACGTGAAGTAAAGCTCAGAAAAGAGGCTGAGGATGCACTGAGAGCCACAGTACAAGAACAACAAAAGCTCTTTGATGAGAGTGAAGAAATTGCTGGTGAGCTACAAATGACCATGAGAAATATTGCCCTACTAGATAGTCGTGCTCAGGAAGCAACCCGTAGGCAAGATGAAGCTGCAGATGAACTATCATTAATTCAAGCATCCATCTCAACCCTGTGGCAAGAAAGGCAGCAGATCAGGAGACAGAAAATGGAAGCCCTTCGCTGGCTTGAGCGGTGGAAAAGTCGTGGACAAGTTGGAGCAGCTCATTACAATGGGGTCATTGGGTTTGCTGAAGAATTACCTGAGTTAGCAGAATTTTCGTTATCAGATCTTCAAAATTCTACATGTAATTTTGCCAAGAGCTTTAAAATCGCCCAAGGTGGATATGGTTGTATATATAAGGGGGAAATGTTGGGTAGGACTGTTTCTATAAAAAAGTTCCATCAACATAATGTGCAAGGACCAGCAGAGTTTCATCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCATCCTCATTTATTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATACGAGTACCTCCCCAATGGAACTCTTCAAGACTACCTATTCCGAAAAAGCAACAATTCCCCTTTGACATGGCATGCCCGAGCACGAATGATTGCTGAAATTGCTAGTGCACTCTGCTTCTTACATTCTTCTAAACCTGAAACTATTATCCATGGTGATCTGAAGCCTGAAACTATACTTCTTGATTCTTCACTTAGTTGCAAGATATGTGAATTCAGGTTCAGCAGGCTTGTGACAGAGGAGTCTCTCTATCGTCCTAGCTTCTACTTGAGCACTGAGCCAAAGGGTCCTTTCACATATACAGATCCAGAGTATCAGAGAACTGGAATACTAACACCCAAGTCTGACATCTACTCCTTTGGGCTCATTATTTTGCAACTTCTCACTGGTAGGACCCCAATTGGATTGGCAGTTCTAGTACGCAACGCAGTTTCATGTGGAAATTTGTCTTCAATTCTTGATTCTTCAGCTGGAGAGTGGCCTTCAGCTGTGGCAACACGATTGGTTGAACTGGGATTGCAATGCTGTCAACAAAATGGTAGAGACAGACCAGAGTTAACACCTACTCTAGTGAGAGAATTGGAGCAGTTGCATGTTTCAGAAGAGCGACCTGTGCCTTCTTTTTACTTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGACGGATTTACCTATGAAGGGGATGCCATACTTGAATGGTTGGAAAATGGACATGATACCTCTCCTATGACTAATTTAAAATTGAGTCACTTGCTTCTTACTCCCAACCACGCACTTAGACTTGCCATCCAAGACTGGCTTTGCAAAGGTTGA	2490	0.4329	MELLNPSHPPHPHHAPPPSSILRFPFHAVPSSSQSQIHLPQPMEHSNHKVHVAVGKSLEKAASLLRWTFNQFPNTEIVIIHAYQPSQMIPTLLGKMPASQASPEVVSAFRREEKEQTMRVVDKYLSICRAARVKASSIVTEADQVQKGIVDMVIRHNIRNLVIGAATENWMKVKKNSGKANYTAKNAPPFCEIWFIYKGKHIWTREASEAPCSLSSCAQPGIASTESLRCRSFQYGKNELPDSEYLQPNSARTTICSGIRSWAQGDIMETEATFSSKSSSCGSHCSSQNSAGGYLDPYLEGMEERVSSQLIETKREVEAATDEAFAERLKCKRLEVKAMEAMRKVSLFESAHAREVKLRKEAEDALRATVQEQQKLFDESEEIAGELQMTMRNIALLDSRAQEATRRQDEAADELSLIQASISTLWQERQQIRRQKMEALRWLERWKSRGQVGAAHYNGVIGFAEELPELAEFSLSDLQNSTCNFAKSFKIAQGGYGCIYKGEMLGRTVSIKKFHQHNVQGPAEFHQEVQVLGSLQHPHLLTLLGVCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWHARARMIAEIASALCFLHSSKPETIIHGDLKPETILLDSSLSCKICEFRFSRLVTEESLYRPSFYLSTEPKGPFTYTDPEYQRTGILTPKSDIYSFGLIILQLLTGRTPIGLAVLVRNAVSCGNLSSILDSSAGEWPSAVATRLVELGLQCCQQNGRDRPELTPTLVRELEQLHVSEERPVPSFYLCPILQEIMHDPQVAADGFTYEGDAILEWLENGHDTSPMTNLKLSHLLLTPNHALRLAIQDWLCKG.	830

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g09067	829	Coils	Coil	359	379	-	-
	Seca4g09067	829	Gene3D	HUPs	43	168	IPR014729	-
	Seca4g09067	829	Coils	Coil	394	414	-	-
	Seca4g09067	829	SUPERFAMILY	RING/U-box	756	828	-	-
	Seca4g09067	829	CDD	STK_N	49	199	-	-
	Seca4g09067	829	Pfam	Protein tyrosine and serine/threonine kinase	490	741	IPR001245	GO:0004672\|GO:0006468
	Seca4g09067	829	PANTHER	OS02G0152300 PROTEIN	50	823	-	-
	Seca4g09067	829	ProSiteProfiles	U-box domain profile.	758	829	IPR003613	GO:0004842\|GO:0016567
	Seca4g09067	829	Gene3D	Transferase(Phosphotransferase) domain 1	558	758	-	-
	Seca4g09067	829	MobiDBLite	consensus disorder prediction	1	21	-	-
	Seca4g09067	829	SUPERFAMILY	Protein kinase-like (PK-like)	469	745	IPR011009	-
	Seca4g09067	829	Gene3D	Phosphorylase Kinase; domain 1	462	557	-	-
	Seca4g09067	829	SMART	Ubox_2	762	825	IPR003613	GO:0004842\|GO:0016567
	Seca4g09067	829	Pfam	U-box domain	759	828	IPR003613	GO:0004842\|GO:0016567
	Seca4g09067	829	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	759	828	IPR013083	-
	Seca4g09067	829	Coils	Coil	303	323	-	-
	Seca4g09067	829	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	64	167	-	-
	Seca4g09067	829	CDD	RING-Ubox_WDSUB1-like	760	815	-	-
	Seca4g09067	829	ProSiteProfiles	Protein kinase domain profile.	485	751	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g09067	Seca-Chr4	215576051	215581180	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g09067	47	826	U-box Gene Family	AT2G45910	36.273	9.10e-170	510

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Seca4g09067		PK_Tyr_Ser-Thr	3.5e-35	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g09067	-		-	gmx:100788846	1363.59