Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09059 ATGGGAGTTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCATATAACACTGGGTTAAATTCAAAGTATGTGAGTACAGATGGAAATGATGTTAGCAGCTCAAACAGTAAGGGTTCGGCTGTGTCGGTGCCTCAGACTCCTAGGAGTGAGGGTGAGATCTTGCAGTCACCCAATTTAAAGAGCTTTACATTAGCAGAACTTAAGACATCCACTAGAAATTTCCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGGTGGATTGATGAGAATTCATTGGCTGCTGCCAAACCTGGCACTGGCATTGTTATTGCTGTGAAAAGACTTAATCAAGATGGATTCCAGGGTCACAGGGAGTGGTTGGCTGAAGTCAACTATCTTGGACAGCTTTCTCATCCTCATCTAGTGAGATTGATTGGGTATTGCCTTGAAGATGAGCACCGCCTTCTTGTCTATGAATTTATGCCTCGTGGAAGCTTGGAGAATCATTTGTTCAGGAGAGGCTCATATTTCCAACCTCTTTCTTGGAGCCTCCGTTTGAAGGTTGCTCTTGATGCTGCTAAAGGGCTTGCATTTCTGCACAGTGCTGAAACAAAAGTGATATATAGAGATTTTAAGACTTCAAATGTCTTGCTGGATTCTGATTACACTGCAAAGCTTTCTGATTTTGGGCTGGCAAAGGATGGTCCAACAGGTGACAAAAGTCATGTCTCCACCAGGGTAATGGGAACCTATGGATATGCAGCTCCTGAATATCTAGCCACAGGTCATCTTACTACTAAAAGTGATGTCTATAGTTTTGGTGTTGTCCTGCTGGAAATGTTATCTGGTAAGAAGGCAGTTGACAAGAATAGACCAACTGGACAACAAAGCTTGGTGGCATGGGCTAAACCCTACCTGGCTAATAAGCGTAAAGTATTCCACGTGTTAGACAGCCGGCTTGAAGGGCAGTATTCAACAGAGGAGGCCTACAAGGTATCCACCCTTGCTTTGAGATGCCTATCAATAGAATCCAAGTTCAGGCCAAACATGGATGAAGTGGTTAGAACTTTGGAGCAGTTGCAGGTTTCTAATGTAAGTGGAGGTAATCAAAATCCTTCTACTAATGGGTCTCGAGCTCGTAGAAAAAGTGCTGATGATGCTAAACGTGTGAGGACCCCTACATCTTACCCCCGGCCCTCTGCATCCCCTCTCTATGCTTGA 1218 0.4433 MGVCLSAQIKAESPYNTGLNSKYVSTDGNDVSSSNSKGSAVSVPQTPRSEGEILQSPNLKSFTLAELKTSTRNFRPDSVLGEGGFGSVFKGWIDENSLAAAKPGTGIVIAVKRLNQDGFQGHREWLAEVNYLGQLSHPHLVRLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAETKVIYRDFKTSNVLLDSDYTAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTTKSDVYSFGVVLLEMLSGKKAVDKNRPTGQQSLVAWAKPYLANKRKVFHVLDSRLEGQYSTEEAYKVSTLALRCLSIESKFRPNMDEVVRTLEQLQVSNVSGGNQNPSTNGSRARRKSADDAKRVRTPTSYPRPSASPLYA. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09059 405 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Seca4g09059 405 SUPERFAMILY Protein kinase-like (PK-like) 45 356 IPR011009 -
Seca4g09059 405 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Seca4g09059 405 MobiDBLite consensus disorder prediction 18 52 - -
Seca4g09059 405 MobiDBLite consensus disorder prediction 361 405 - -
Seca4g09059 405 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Seca4g09059 405 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Seca4g09059 405 MobiDBLite consensus disorder prediction 361 377 - -
Seca4g09059 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Seca4g09059 405 CDD STKc_IRAK 80 359 - -
Seca4g09059 405 FunFam Probable serine/threonine-protein kinase PBL8 160 375 - -
Seca4g09059 405 PANTHER OS01G0588500 PROTEIN-RELATED 39 360 - -
Seca4g09059 405 Gene3D Transferase(Phosphotransferase) domain 1 160 378 - -
Seca4g09059 405 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09059 Seca-Chr4 215485492 215488997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09059 52 356 Glycoside Hydrolase AT3G07070 49.020 5.36e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca4g09059 PK_Tyr_Ser-Thr 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09059 - - gmx:100798404 704.901