Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g09059 | ATGGGAGTTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCATATAACACTGGGTTAAATTCAAAGTATGTGAGTACAGATGGAAATGATGTTAGCAGCTCAAACAGTAAGGGTTCGGCTGTGTCGGTGCCTCAGACTCCTAGGAGTGAGGGTGAGATCTTGCAGTCACCCAATTTAAAGAGCTTTACATTAGCAGAACTTAAGACATCCACTAGAAATTTCCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGGTGGATTGATGAGAATTCATTGGCTGCTGCCAAACCTGGCACTGGCATTGTTATTGCTGTGAAAAGACTTAATCAAGATGGATTCCAGGGTCACAGGGAGTGGTTGGCTGAAGTCAACTATCTTGGACAGCTTTCTCATCCTCATCTAGTGAGATTGATTGGGTATTGCCTTGAAGATGAGCACCGCCTTCTTGTCTATGAATTTATGCCTCGTGGAAGCTTGGAGAATCATTTGTTCAGGAGAGGCTCATATTTCCAACCTCTTTCTTGGAGCCTCCGTTTGAAGGTTGCTCTTGATGCTGCTAAAGGGCTTGCATTTCTGCACAGTGCTGAAACAAAAGTGATATATAGAGATTTTAAGACTTCAAATGTCTTGCTGGATTCTGATTACACTGCAAAGCTTTCTGATTTTGGGCTGGCAAAGGATGGTCCAACAGGTGACAAAAGTCATGTCTCCACCAGGGTAATGGGAACCTATGGATATGCAGCTCCTGAATATCTAGCCACAGGTCATCTTACTACTAAAAGTGATGTCTATAGTTTTGGTGTTGTCCTGCTGGAAATGTTATCTGGTAAGAAGGCAGTTGACAAGAATAGACCAACTGGACAACAAAGCTTGGTGGCATGGGCTAAACCCTACCTGGCTAATAAGCGTAAAGTATTCCACGTGTTAGACAGCCGGCTTGAAGGGCAGTATTCAACAGAGGAGGCCTACAAGGTATCCACCCTTGCTTTGAGATGCCTATCAATAGAATCCAAGTTCAGGCCAAACATGGATGAAGTGGTTAGAACTTTGGAGCAGTTGCAGGTTTCTAATGTAAGTGGAGGTAATCAAAATCCTTCTACTAATGGGTCTCGAGCTCGTAGAAAAAGTGCTGATGATGCTAAACGTGTGAGGACCCCTACATCTTACCCCCGGCCCTCTGCATCCCCTCTCTATGCTTGA | 1218 | 0.4433 | MGVCLSAQIKAESPYNTGLNSKYVSTDGNDVSSSNSKGSAVSVPQTPRSEGEILQSPNLKSFTLAELKTSTRNFRPDSVLGEGGFGSVFKGWIDENSLAAAKPGTGIVIAVKRLNQDGFQGHREWLAEVNYLGQLSHPHLVRLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAETKVIYRDFKTSNVLLDSDYTAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTTKSDVYSFGVVLLEMLSGKKAVDKNRPTGQQSLVAWAKPYLANKRKVFHVLDSRLEGQYSTEEAYKVSTLALRCLSIESKFRPNMDEVVRTLEQLQVSNVSGGNQNPSTNGSRARRKSADDAKRVRTPTSYPRPSASPLYA. | 406 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g09059 | 405 | Gene3D | Phosphorylase Kinase; domain 1 | 49 | 159 | - | - | |
Seca4g09059 | 405 | SUPERFAMILY | Protein kinase-like (PK-like) | 45 | 356 | IPR011009 | - | |
Seca4g09059 | 405 | Pfam | Protein tyrosine and serine/threonine kinase | 78 | 356 | IPR001245 | GO:0004672|GO:0006468 | |
Seca4g09059 | 405 | MobiDBLite | consensus disorder prediction | 18 | 52 | - | - | |
Seca4g09059 | 405 | MobiDBLite | consensus disorder prediction | 361 | 405 | - | - | |
Seca4g09059 | 405 | FunFam | Serine/threonine-protein kinase BIK1 | 41 | 159 | - | - | |
Seca4g09059 | 405 | ProSitePatterns | Protein kinases ATP-binding region signature. | 80 | 112 | IPR017441 | GO:0005524 | |
Seca4g09059 | 405 | MobiDBLite | consensus disorder prediction | 361 | 377 | - | - | |
Seca4g09059 | 405 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 205 | 217 | IPR008271 | GO:0004672|GO:0006468 | |
Seca4g09059 | 405 | CDD | STKc_IRAK | 80 | 359 | - | - | |
Seca4g09059 | 405 | FunFam | Probable serine/threonine-protein kinase PBL8 | 160 | 375 | - | - | |
Seca4g09059 | 405 | PANTHER | OS01G0588500 PROTEIN-RELATED | 39 | 360 | - | - | |
Seca4g09059 | 405 | Gene3D | Transferase(Phosphotransferase) domain 1 | 160 | 378 | - | - | |
Seca4g09059 | 405 | ProSiteProfiles | Protein kinase domain profile. | 74 | 359 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g09059 | Seca-Chr4 | 215485492 | 215488997 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g09059 | 52 | 356 | Glycoside Hydrolase | AT3G07070 | 49.020 | 5.36e-103 | 310 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-VIIa-2 | Seca4g09059 | PK_Tyr_Ser-Thr | 3.9e-47 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g09059 | - | - | gmx:100798404 | 704.901 |