Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09034 ATGAGTTCTGTTTTCCGAGGGAGTAGGGGAGATATTGAAAGCGGCTTTTCAGAATATGCTCCTGACAGAAACTCAATGCGTGTTCATCCATCTCGCCCAAATAGCAATTCTCTGGCTTTTCTTACTACAGTTATTGTGTTGTTCATGTTATTGAGCTCTCCTCAGGTGTCACATTATCTTTTGCTCTGGCTTATAATGGCTATTTTTGCAATGGCTACAAGCCTGAGGATGTATGCAGCTTGTCAACATCTTCAAGCACATGCCAGGGCTCATGCTGCAGCAGCCCATGGGTTGCTTGGCCATGATGAATTACATCTTCACGTGCCACCATCCATAGCAATTGCAACTAGAGGACGATTGCATGGACTTAGACTTCAGCTTGCACTTATTGATCGTGAATTTGATGAGCTAGATTATGACACTTTGAGAGCTCTGGATTCAGATACTGCTTCTAGGACTCCTTCAATGACTGAGGAAGAGATAAATGCCTTGCCTGTTCACGCATACAAAGTTCCAGTTCCAACAAAGGATGGCTCAGCAGGGTTGGCATCCTCTTCAAGTGCACCTGAGATTAAACAAGACTCTGAAGGAGCAGAGGGAAGTATCCAAGTTTCAGAAGATGAGCTGACATGTACCATATGCTTGGACCAAGTTAAGAGAGGGGAGCTTGTTCGTAGCTTGCCATGCTTGCATCAGTTTCATACCAGCTGCATCGACCCATGGCTCCGTCAACAAGGAACATGTCCAGTTTGTAAATTTAGGATGGGGTCGGGATGGAGGGGAAACGGGGACAGCGAATCCGATGGTTCAGACATTGTGTAG 822 0.4574 MSSVFRGSRGDIESGFSEYAPDRNSMRVHPSRPNSNSLAFLTTVIVLFMLLSSPQVSHYLLLWLIMAIFAMATSLRMYAACQHLQAHARAHAAAAHGLLGHDELHLHVPPSIAIATRGRLHGLRLQLALIDREFDELDYDTLRALDSDTASRTPSMTEEEINALPVHAYKVPVPTKDGSAGLASSSSAPEIKQDSEGAEGSIQVSEDELTCTICLDQVKRGELVRSLPCLHQFHTSCIDPWLRQQGTCPVCKFRMGSGWRGNGDSESDGSDIV. 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09034 273 MobiDBLite consensus disorder prediction 175 202 - -
Seca4g09034 273 PANTHER TARGET OF ERK KINASE MPK-1 3 258 - -
Seca4g09034 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 257 IPR013083 -
Seca4g09034 273 CDD RING-H2_PA-TM-RING 210 252 - -
Seca4g09034 273 ProSiteProfiles Zinc finger RING-type profile. 211 252 IPR001841 -
Seca4g09034 273 SUPERFAMILY RING/U-box 206 255 - -
Seca4g09034 273 Pfam Ring finger domain 210 252 IPR001841 -
Seca4g09034 273 SMART ring_2 211 251 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09034 Seca-Chr4 214996098 215000741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09034 1 273 C3H Transcription Factor Family AT3G55530 66.304 9.10e-117 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09034 K16283 - gmx:100805406 397.512