Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09025 ATGATGGAACAAAAATTTGGGGATAATTTGATTAACATGCATGGATTAACTCTTCCTCTCCCTCTTTCTCCAAACAACTTTCTTTCTTGTGCTCACCCTCACCTTGCCTTAAGATCTCTTCAACCATCTTCACGCCTCCAAAACCAAAATTCAGCGACTTTTTCCATACCCAGTTGCAAAATCAGCTACGGAAGTGGTTTCAATCCCCTCGTGCTCCATTCACGCTACCACAACAACAGGAAGCATGTGAAGAAAGGGAGAGGTAGCAATAGAATCATCGTTGTGAGAGCAAGCCGTGGTGAGTCTCCTTATGAGGTTCTGGGCTTGTCACCATCCGCAACAGTGGACGAAATCAAGAAGGCGTATCGGAAACTTGCCCTCAAGTATCATCCTGATGTCAATAAAGAGGATAAGGCGCAGGAGAAATTTATGAGGATAAAACATGCATACAATACATTGCTGAATTCTAGTTCCCGCAAAAAATATGGTTCTGGTTATCGTGGTTATGATTCTTCTCAAAGAAGCCAAAGTAGGAATCCAGAAGCAGAAGAAGAATTTTATGGATTAGGTATTATTTTGAGGGATGTTCAAATAACAATAGGTAGATATATACTCTCTGGTAGACATCATGTGATCATGTCAGCCATAACTTTAGCTTGCATTCGTTACGAAGTTTGCTGGGCATTGATTATATGA 696 0.4095 MMEQKFGDNLINMHGLTLPLPLSPNNFLSCAHPHLALRSLQPSSRLQNQNSATFSIPSCKISYGSGFNPLVLHSRYHNNRKHVKKGRGSNRIIVVRASRGESPYEVLGLSPSATVDEIKKAYRKLALKYHPDVNKEDKAQEKFMRIKHAYNTLLNSSSRKKYGSGYRGYDSSQRSQSRNPEAEEEFYGLGIILRDVQITIGRYILSGRHHVIMSAITLACIRYEVCWALII. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09025 231 ProSiteProfiles dnaJ domain profile. 102 166 IPR001623 -
Seca4g09025 231 MobiDBLite consensus disorder prediction 162 181 - -
Seca4g09025 231 SUPERFAMILY Chaperone J-domain 89 162 IPR036869 -
Seca4g09025 231 MobiDBLite consensus disorder prediction 162 176 - -
Seca4g09025 231 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 52 176 - -
Seca4g09025 231 CDD DnaJ 103 155 IPR001623 -
Seca4g09025 231 SMART dnaj_3 101 158 IPR001623 -
Seca4g09025 231 PRINTS DnaJ domain signature 104 122 IPR001623 -
Seca4g09025 231 PRINTS DnaJ domain signature 138 158 IPR001623 -
Seca4g09025 231 PRINTS DnaJ domain signature 122 137 IPR001623 -
Seca4g09025 231 Pfam DnaJ domain 103 162 IPR001623 -
Seca4g09025 231 ProSitePatterns Nt-dnaJ domain signature. 143 162 IPR018253 -
Seca4g09025 231 Gene3D DnaJ domain 90 187 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09025 Seca-Chr4 214902605 214907874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09025 104 164 C2H2 Transcription Factor Family AT1G74250 40.299 7.45e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09025 - - pvu:PHAVU_005G146300g 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09025 4 214902605 214907874 Seca4g09025 4 214902605 214907874 ECH