Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09004 ATGGGAGCTTGTTGCTCTAAATTCTGTACATGCTGGTGGCCTTCCAATACCCAATCAAATCTTCAAGACTTGCCTGATAATGAAGATGGGAACAAGGGTGAGGAGAAAGGTGCTGGCTTTACTGAGTACAGCTTGGACCAATTGAGAACTGCGACCTCAGGATTTTCACCTGATAACATTGTCTCGGAACACGGTGAAAAGGCTCCCAATGTTGTCTACAAAGGAAGGGTTGAAGATGATAGGTTGGTTGCTGTGAAGCGTTTCAACAAGTCTGCTTGGCCTGATCCTCGGCAGTTCCTAGAGGAAGCAAGAGCAGTGGGGCAGCTGCGGAATGAGAGGTTAGCTAACTTGGTTGGTTGTTGCTGTGAAGGAGAAGAGAGAGTGCTTGTTGCAGAGTTTATGCCCAATGAAACTCTCTCCAAACATCTCTTTCACTGTGAGTTTTCATTCTTTTCTGTTTCTACTATGCATTCTTCATCAATCAGGGAGACCCAGCCAATGAAATGGGCAATGAGGCTGAGAGTGGCCTTGTATTTAGCACAAGCGTTGGAATACTGCAGCAGTAGAGGAAGGGCATTGTATCATGATCTTAATGCTTATAGAATTTTATTTGATCAGGATGGCAACCCTAGACTCTCTTGTTTTGGACTAATGAAAAACAGCAGAGATGGTAGAAGCTACAGTACAAATTTAGCCTTCACCCCTCCTGAGTATTTGAGGACAGGAAGAATCATCCCAGAAAGTGTAATTTACAGTTTCGGAACACTTCTGCTTGATCTTCTGAGTGGCAAGCATATCCCACCCAGTCATGCACTTGACCTTATTCGGGGCAAAAATTTTCAGTTGCTTATGGACTCGTGTTTGGAAGGTCATTTTTCAGATGATGATGGAACTGAGTTAGTGAGATTAGCTACACGTTGTTTGCAGTATGAACCTCGTGAGAGGCCAAATGCCAAGTCACTTGTGACTGCTCTAACTCCTCTTCAGAAAGAAACTTCTGTTCCATCACTTGTTTTATTGGGCATACCGGATGAGAGTGCGTCATCAAAGGAAACAATTTCACTAACACCATTTGGTGAAGCTTGTTCAAAAAGAGATCTTAATTCAATACATGAAATTTTGGAAAGAGCAGGGTACAAGGATGATGAAGATGTTGCAAATGAGCTTTCCTTCCAAATGTGGACAGATCAAATACAAGAAACACTGAATTCAAAGAAGCATGGAGATTCTGCTTTTCATGCCAGGGACTACTCTAGGGCCATTGACTTCTATACTCAATTCATCGATGGTGGGACCATGGTATCACCAACTGTGTTTGCAAGGCGGTGCTTATGTTATCTGATGAACAACATGGCACAAGAAGCACTAGGAGATGCCATGCAAGCTCAATCAGTATCTCCCACCTGGCCTACTGCATTCTATCTCCAAGCAGTAGCTCTCTTCAGCCTTGGGATGGACATTGATGCACAGGAGAGTCTTAAAGACGGCACAACACTGGAAACCAGAAAGCATACAAATTGA 1521 0.4352 MGACCSKFCTCWWPSNTQSNLQDLPDNEDGNKGEEKGAGFTEYSLDQLRTATSGFSPDNIVSEHGEKAPNVVYKGRVEDDRLVAVKRFNKSAWPDPRQFLEEARAVGQLRNERLANLVGCCCEGEERVLVAEFMPNETLSKHLFHCEFSFFSVSTMHSSSIRETQPMKWAMRLRVALYLAQALEYCSSRGRALYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRIIPESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFQLLMDSCLEGHFSDDDGTELVRLATRCLQYEPRERPNAKSLVTALTPLQKETSVPSLVLLGIPDESASSKETISLTPFGEACSKRDLNSIHEILERAGYKDDEDVANELSFQMWTDQIQETLNSKKHGDSAFHARDYSRAIDFYTQFIDGGTMVSPTVFARRCLCYLMNNMAQEALGDAMQAQSVSPTWPTAFYLQAVALFSLGMDIDAQESLKDGTTLETRKHTN. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09004 506 FunFam probable serine/threonine-protein kinase At5g41260 135 342 - -
Seca4g09004 506 FunFam probable serine/threonine-protein kinase At4g35230 30 133 - -
Seca4g09004 506 Pfam Protein tyrosine and serine/threonine kinase 72 325 IPR001245 GO:0004672|GO:0006468
Seca4g09004 506 Gene3D Tetratricopeptide repeat domain 399 506 IPR011990 GO:0005515
Seca4g09004 506 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 11 504 IPR045845 GO:0004672|GO:0009742
Seca4g09004 506 SUPERFAMILY TPR-like 403 502 IPR011990 GO:0005515
Seca4g09004 506 Gene3D Phosphorylase Kinase; domain 1 30 133 - -
Seca4g09004 506 SUPERFAMILY Protein kinase-like (PK-like) 40 331 IPR011009 -
Seca4g09004 506 ProSiteProfiles Protein kinase domain profile. 58 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09004 506 FunFam probable serine/threonine-protein kinase At4g35230 399 506 - -
Seca4g09004 506 Gene3D Transferase(Phosphotransferase) domain 1 135 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09004 Seca-Chr4 214647262 214651856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09004 27 325 Glycoside Hydrolase AT3G07070 30.769 2.18e-36 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Seca4g09004 PK_Tyr_Ser-Thr 2.8e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09004 - - gmx:100804210 863.218