Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08999 ATGGATGAGAAACAGAGTCTGTATTCAGCTGGTGATTGGAGGAGAATACCAATTTGCACCTTCTTCAAGGATGCCAGACTAGTTTTTAAATTAGATAGTCTTGGTCGGGAAATATTATCAATTGCATTGCCTGCTGCAATGGCTTTGACAGCTGACCCTATTGCTTCACTGGTTGACACAGCATTCATTGGCCAAATAGGTCCAGTGGAGCTTGCAGCTGTAGGAGTTTCCATAGCTCTCTTTAATCAAGTATCAAGGATTGCAATATTCCCACTAGTCAGTGTCACAACCTCTTTTGTGGCTGAGGAAGATACCCTCAGTGGAGCAGGCTCCCAGGTAGAGGAGAGTGGATGCTTGGAAGCAGGTCCACCTATGGATGCTGAAACCAAAGAGTTCTTACCACAAAAAGGTGTTCACAACTCAGATTTGGTTGGTGAAAGCTTAAATATAGTTAAGGAGGTACATAAGAGAAGGCATATCCCTTCAGCTTCATCAGCATTATTTTTTGGTGGTATCCTTGGCATCATCCAGGCAATATTACTTATATCTGCAGCAAAACCTTTATTAAACTTCATGGGAGTAACTTCTGACTCTCCTATGCTACACCCTGCACAGCACTACCTGACATTGAGGTCCCTTGGTGCTCCTGCAGTTCTTCTCTCATTAGCTACGCAGGGAGTCTTTAGAGGATTTAAAGACACTAAAACTCCTTTATATGCCACCGTGGCAGGAGATGTGACCAACATAGCACTGGATCCTTTATTCATGTTTGTATTCCGAATGGGTGTCAGTGGTGCAGCAATTGCCCATGTTATATCTCAGTATCTAATTTCAATTATCCTCCTGTGGAAGTTGATGGAACAAGTTGATCTTATACCTCCAAGCATCAAGCATCTGCAATTTGATCGTTTTCTTAAGAATGGTTTTCTACTATTAATGAGAGTCATTGCTGTAACATTCTGCGTGACACTGGCTGCATCATTAGCTGCACGCCAGGGATCAACATCCATGGCTGCATTTCAAGTCTGTCTGCAGGTTTGGTTAGCAGTGTCTCTTCTTGCTGATGGTCTGGCTGTTGCTGGGCAGGCAATTCTTGCAGGTGCATTTGCTAACAAGGACCGTGACAAGGCCACAGCAACTGCATCCCGAGTATTACAGATGGGTTTGGTTCTGGGATTTGCACTTGCTTTCATTCTTGGAACAGGACTGCACTTTGGAGCTAAGCTATTTACCAAAGATGATAATGTCCTCCACCTCATTAAAGTTGGAATACCGTTTGTTGCACTCACTCAACCCCTGAATTCTTTGGCTTTTGTATTTGATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGGTTGTGGTGGCAATTATTAGCATCATTTGTCTGCTTATTTTGTCATCTGCTGGTGGTTTCATTGGAATTTGGGTTGCTTTGACCATCTATATGAGTCTAAGGGCATTTGCTGGCTTCTTGAGGATTGGAACGGGATCAGGACCGTGGGAGTTCCTTAGGAGCTGA 1536 0.4368 MDEKQSLYSAGDWRRIPICTFFKDARLVFKLDSLGREILSIALPAAMALTADPIASLVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTLSGAGSQVEESGCLEAGPPMDAETKEFLPQKGVHNSDLVGESLNIVKEVHKRRHIPSASSALFFGGILGIIQAILLISAAKPLLNFMGVTSDSPMLHPAQHYLTLRSLGAPAVLLSLATQGVFRGFKDTKTPLYATVAGDVTNIALDPLFMFVFRMGVSGAAIAHVISQYLISIILLWKLMEQVDLIPPSIKHLQFDRFLKNGFLLLMRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQVWLAVSLLADGLAVAGQAILAGAFANKDRDKATATASRVLQMGLVLGFALAFILGTGLHFGAKLFTKDDNVLHLIKVGIPFVALTQPLNSLAFVFDGVNFGASDFAYSAFSMVVVAIISIICLLILSSAGGFIGIWVALTIYMSLRAFAGFLRIGTGSGPWEFLRS. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08999 511 CDD MATE_DinF_like 34 501 IPR044644 -
Seca4g08999 511 Pfam MatE 163 254 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Seca4g08999 511 Pfam MatE 313 466 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Seca4g08999 511 NCBIfam MATE family efflux transporter 44 481 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Seca4g08999 511 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 11 511 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08999 Seca-Chr4 214559936 214565450 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08999 K26938 - gmx:100780165 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03783 4 66552712 66559808 Seca4g08999 4 214559936 214565450 PCT