Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08998 ATGAATTCCCTGTGCTTCCACAACGCAAATGCAATACACACTCTCCATTTCCACTCCCACTCCCTCTTCCACCCAACCCCTTCCTTTCTTTTTCTCAAAACACACTCCTCAAGACCCCGCTTCCGATGCTGCTCCATCGAGATCGACATGGTGAAGGACAAGCAAGGCACCTACGCCCCTAAACAAAACAAAGTCGTCGTCCTTTGGGACCTCGATAACAAACCCCCACGTGGCCCACCCTACAACGCCGCTCTCTCTCTCAAAACCCTCGCTCAACACTTCGGCGACGTCGTAGACATCTCCGCCTACGCCAACCGCCACGCCTTCATCCATCTCCCTCAATGGGTCCTCGACCAACGCCGTGAACGCAAAAACCTCGACATCCTCGAGCGCAAGGGCGTCGTCACACCTTCCGAGCCTTACGTCTGCAACGTCTGTGGCCGCAAATGCAAGACCAACTTCGACCTCAAGAAGCACTTCAAGCAGCTCCACCAGCGCGAGCGTCAGAAGAAGCTGAACCGGTTGAACTCCCTTAAGGGGAAGAAGCGACAGCGCTATAAGGAGCGGTTCATTCGTGGGAACCATAAGTACAATGAGGCTGCTAGGGCTCTTGTTACGCCTAAGGTTGGGTATGGTCTTGCTTCGGAGTTGCGGCGTGCTGGGGTTTTTGTGAAGACGGTGGAGGATAAGCCTCAGGCTGCGGATTGGGCGTTGAAGAGGCAGATGCAACACTCGATGAGTAGAGGGATTGATTGGTTGTTTCTGGTTTCGGATGATTCGGATTTCTCCGAGATGTTGAGGAGGGCGAGGGAGGCCAATTTGGGGACTGTGGTTGTTGGGGATATGGATAGGGCGTTGGGGCGGCATGCTGATTTGTGGGTTCCTTGGCTTGCGGTTGAGAATGGAGAGATTTCGGAGAAAGATTTGGTGCCCAAGAACAGAGGGAGGAGAGAGGATTTGGATGGGTTGTTTTTGAATGAGGATGAGGAATTGGAAGAGGATTTTATGTTAGTGTATAGCGAGGACGAGGATGAAGAATACACTGAACAAGAAGAAGAAGATGAGTTTTATATTTATTGA 1080 0.5185 MNSLCFHNANAIHTLHFHSHSLFHPTPSFLFLKTHSSRPRFRCCSIEIDMVKDKQGTYAPKQNKVVVLWDLDNKPPRGPPYNAALSLKTLAQHFGDVVDISAYANRHAFIHLPQWVLDQRRERKNLDILERKGVVTPSEPYVCNVCGRKCKTNFDLKKHFKQLHQRERQKKLNRLNSLKGKKRQRYKERFIRGNHKYNEAARALVTPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWLFLVSDDSDFSEMLRRAREANLGTVVVGDMDRALGRHADLWVPWLAVENGEISEKDLVPKNRGRREDLDGLFLNEDEELEEDFMLVYSEDEDEEYTEQEEEDEFYIY. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08998 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 169 IPR013087 -
Seca4g08998 359 CDD PIN_LabA-like 151 281 - -
Seca4g08998 359 Gene3D - 57 297 - -
Seca4g08998 359 SMART c2h2final6 141 164 IPR013087 -
Seca4g08998 359 ProSitePatterns Zinc finger C2H2 type domain signature. 143 164 IPR013087 -
Seca4g08998 359 SUPERFAMILY beta-beta-alpha zinc fingers 134 169 IPR036236 -
Seca4g08998 359 Coils Coil 161 181 - -
Seca4g08998 359 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 43 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08998 Seca-Chr4 214532619 214533698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08998 1 348 C2H2 Transcription Factor Family AT5G52010 63.462 1.81e-165 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g08998 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08998 - - pvu:PHAVU_001G023900g 503.827