Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08995 ATGAGGAAGCCCGAGACATCTAGCAAAAACAACAACAATAACAACAAGCTTAGAAAGGGGTTGTGGTCACCAGAAGAAGATGAAAAGCTCATGAACTATATGCTAAACAATGGACAAGGTTGTTGGAGCGATGTGGCAAGAAATGCTGGCTTGCAAAGGTGTGGCAAAAGTTGTCGGCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAAAGAGGTGCTTTCTCACCCCAAGAAGAGGAACTCATCGTCCATTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGCTTACCTGGGAGAACTGACAATGAAATAAAAAATTTTTGGAATTCAACAATAAAGAAAAGACTTAAGAACATGTCATCCACAACCACAACAACCTCAACCTCACCAAATGCAAGTGAGTCCTTATCTGAGCCTAATAAAGACCTCAACAACATGCAGCATGGAGGCTTTATGTCTGCACCACATCAAGTACATGTAGCAGCAAGCAGTTACATGCCTATGTTCAGTTCATCTCCATCACCATCAATTCAAACCACAGTTCTCAATACAATGATTGATAGGTTGCCTATGCCAGATTCTGCAGGAGGATACTTCAATGGTACAACCGAGCAATGTTTCTCAGTACTGCATAGTGGGGTTGATTATAACAACAATGGTTCTTATTTAGAAAATGGAGTGTTTGGGAGTGTAAATATTGGAGTTGAAGGGGATATGTTTGTTCCTCCTCTAGAGAATGTTAGCAATAATAATACTACTAACCTGAGAGTGGAGAGTACATGCAAGAAAGAGTTAACTAACAATAGTAATTACTTTGATGACATAAACACCATCCTTAATAACTGTAATATTGGGAACAATAACAGAGCTGAAAATAGGGGTGGGGTAGTAGTTGAAGATTTATTTCAACAACAGTTAACCAATATGGGAGAGTGGGACTTTGAGGACTTGATGAAAGATGTTTCCTCTTTTCCCTTTCTTGATTTTTCATTCTGA 1011 0.3966 MRKPETSSKNNNNNNKLRKGLWSPEEDEKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSTTTTTSTSPNASESLSEPNKDLNNMQHGGFMSAPHQVHVAASSYMPMFSSSPSPSIQTTVLNTMIDRLPMPDSAGGYFNGTTEQCFSVLHSGVDYNNNGSYLENGVFGSVNIGVEGDMFVPPLENVSNNNTTNLRVESTCKKELTNNSNYFDDINTILNNCNIGNNNRAENRGGVVVEDLFQQQLTNMGEWDFEDLMKDVSSFPFLDFSF. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08995 336 CDD SANT 22 66 IPR001005 -
Seca4g08995 336 PANTHER MYB DOMAIN PROTEIN 55 11 254 - -
Seca4g08995 336 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Seca4g08995 336 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Seca4g08995 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Seca4g08995 336 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Seca4g08995 336 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Seca4g08995 336 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Seca4g08995 336 Gene3D - 74 148 - -
Seca4g08995 336 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g08995 336 Gene3D - 16 72 - -
Seca4g08995 336 SMART sant 71 119 IPR001005 -
Seca4g08995 336 SMART sant 18 68 IPR001005 -
Seca4g08995 336 FunFam MYB transcription factor 16 72 - -
Seca4g08995 336 CDD SANT 74 114 IPR001005 -
Seca4g08995 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Seca4g08995 336 MobiDBLite consensus disorder prediction 123 144 - -
Seca4g08995 336 FunFam Transcription factor MYB46 73 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08995 Seca-Chr4 214449935 214452992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08995 3 334 MYB Transcription Factor Family AT3G08500 48.711 3.34e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g08995 Myb_DNA-binding 1.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08995 K09422 - gmx:100799410 415.616