Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08991 ATGGCTGCAACTCCTACCAAGTCTTTCCAATCTCCCTCAAAACCCTACCTCCGATCGCAATCCAATGCGAAATCCACACCCGCTGTAACTCCCGTCACACCACAATCCCTACCTCTTCGCAGATCCACGCGCTCAAAGTCCCTCCACTTTGATTCTCCCAAACCTCCCCATGAATCTTGCGAAAATCAACTCGGAACTCCGAAAAACAGGAGAGCCAGGGAGAATCTCGATCAACCCAGGTCTCGTCGATCCATTGATTACACAAAGGATTCTTACAAAGATAAAGTCATAACCCGCACAAGTGCAACTAGAGGAAATGGAAATGCTTCTGTTGAAGCATCAAAGAAGAGAAATGGGAAGGGGTCAGTTGAAGTTTCCTTTGCTCCAGCATCGCCCGATCAATCGGAAACTAAGAAGAGGAAGAGGGAGGGTGAGAGAACGGTTGTTACTAGAGCTTTGGCTGCGATAAAAGGGAAATCGGAGAATAGGCAAAAGATTGTGGAGCTGCCAAAGCGCCGTACTCATTATAAAAAAGTGGTTTATGACGGGGGCGAGTTTGAAGTGGGGGATGCTGTTTATGTGAAGAGGAGAGAAGATGCTACTTCTGATGATGAAGATCCCGAAGTGGAGGAGTGTAGGTTGTGTTTTTGTTCTGGCAATGAGATCATGATTGAGTGTGACGAATGTTTAGGTGGGTTTCATTTGAAATGCTTGAAGCCGCCGTTGAAGGACGTTCCTGAAGGGGATTGGATATGTGGGTTCTGTGAGGCTCGTAAGATGGGTAGGGAAGTTAATTTTCCAAAGCCTCCACAGGGTAAGAATTTAGTTAGGACAATGAGGCAGAAGCTTTTATCCAGTGATTTGTGGGCTGCTCATATTGAGAGTATATGGAAAGTAGATGGCAACTACTGGTGTCGAGTACGGTGGTATATAATCCCAGAAGAAACTTCTGCTGGGCGACAACCACATAACCTGAGCAGGGAGCTATATCAAACCAATGATTTTGCAGACATTGAGATGGAATCTGTCCTTAGACACTGCTATGTCATGACCCCCAAAGAATATGCTAAAGCAAAAGATGAGGGAGATGATATATTCTTCTGTGAATATGAATATGACATCCACTGGCACAGTTTCAAACGTCTTGCTGATATTGATAATGAAAGAGAGAATGGTGGAAAGACTGACAGTGATGAAGACTGGAATGTTGACAAGGAATCAGACTCTGATACTGATGAAGATGTTGAATATGAAGAGGAAAATATTAAAAATGCACAATCTCAACCATCAACAAGCCATCAGTTAGCTGCAAATCTGCACAAGGGGCGGTTCTTTGGACTTCAGAAGATAGGCACAAAAAGAATTCCACAGCATATAAGGTCTCACAAACAGACTGATCTTGAGAGAGCAAAGGCTACACTGTTGTTAGCATCACTGCCTAAATCTTTACCTTGTAGAAATAAAGAAATGGAGGAGATAACTACATTTATTAAAGATGCTATTTCTGATGATCAATGTTTGGGACGTTGCCTCTACATTCATGGTGTTCCCGGAACTGGCAAGACAATGAGTGTATTATCAGTAATGAGGAGTTTGAGGTCAGAAGTTGATGCAGGAAACATCAAACCCTACTGTTTTGTGGAGATTAATGGTCTGAAATTGGCATCACCAGAGAATATTTATAGGGTCATATATGAGGCATTAAATGGACACAGGGTCAGCTGGAAAAAGGCTCTCCACCTGCTAAATGAGAGGTTTGTAGAAGGGAAGAAAACTGGAGAAGAGGCTGACAGGCCATGTATTTTGCTAATTGATGAACTTGATCTTCTTGTGACCAGAAACCAGTCGGTTTTGTACAATATTCTTGATTGGCCTACTAAGCCACATTCCAAGCTAATTGTGATAGGCATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGTATACAGAGGCTTTGCTTTAGCCCATATAATCATCAGCAGCTTCAAGAAATCATTTCGAGTCGCCTCAAGGGAATTGATGTATTTGAAAAGCAAGCTATTGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCAGGAGATGCACGTCGTGCTCTGGAGATATGCAGACGTGCAGCTGAAATAGCAGATTATCGTATGAAGGAGCTAACTTCAAATACTGATTTTGTTGCTGCAGCTTCTCTTTTATGCATGAATTCCTTCTGA 2229 0.4271 MAATPTKSFQSPSKPYLRSQSNAKSTPAVTPVTPQSLPLRRSTRSKSLHFDSPKPPHESCENQLGTPKNRRARENLDQPRSRRSIDYTKDSYKDKVITRTSATRGNGNASVEASKKRNGKGSVEVSFAPASPDQSETKKRKREGERTVVTRALAAIKGKSENRQKIVELPKRRTHYKKVVYDGGEFEVGDAVYVKRREDATSDDEDPEVEECRLCFCSGNEIMIECDECLGGFHLKCLKPPLKDVPEGDWICGFCEARKMGREVNFPKPPQGKNLVRTMRQKLLSSDLWAAHIESIWKVDGNYWCRVRWYIIPEETSAGRQPHNLSRELYQTNDFADIEMESVLRHCYVMTPKEYAKAKDEGDDIFFCEYEYDIHWHSFKRLADIDNERENGGKTDSDEDWNVDKESDSDTDEDVEYEEENIKNAQSQPSTSHQLAANLHKGRFFGLQKIGTKRIPQHIRSHKQTDLERAKATLLLASLPKSLPCRNKEMEEITTFIKDAISDDQCLGRCLYIHGVPGTGKTMSVLSVMRSLRSEVDAGNIKPYCFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHLLNERFVEGKKTGEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFSPYNHQQLQEIISSRLKGIDVFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRMKELTSNTDFVAAASLLCMNSF. 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08991 742 SUPERFAMILY FYVE/PHD zinc finger 200 261 IPR011011 -
Seca4g08991 742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 269 IPR013083 -
Seca4g08991 742 MobiDBLite consensus disorder prediction 98 115 - -
Seca4g08991 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 720 IPR027417 -
Seca4g08991 742 MobiDBLite consensus disorder prediction 67 97 - -
Seca4g08991 742 MobiDBLite consensus disorder prediction 390 432 - -
Seca4g08991 742 Pfam AAA lid domain 685 718 IPR041083 -
Seca4g08991 742 Pfam PHD-finger 215 257 IPR019787 -
Seca4g08991 742 MobiDBLite consensus disorder prediction 402 419 - -
Seca4g08991 742 MobiDBLite consensus disorder prediction 1 43 - -
Seca4g08991 742 SMART BAH_4 243 383 IPR001025 GO:0003682
Seca4g08991 742 FunFam Origin recognition complex subunit 1 207 274 - -
Seca4g08991 742 MobiDBLite consensus disorder prediction 1 146 - -
Seca4g08991 742 FunFam Origin recognition complex subunit 1 464 663 - -
Seca4g08991 742 Gene3D - 660 735 - -
Seca4g08991 742 Pfam ATPase family associated with various cellular activities (AAA) 512 657 IPR003959 GO:0005524|GO:0016887
Seca4g08991 742 SMART AAA_5 507 661 IPR003593 GO:0016887
Seca4g08991 742 Pfam BAH domain 292 380 IPR001025 GO:0003682
Seca4g08991 742 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 315 726 - -
Seca4g08991 742 SMART PHD_3 214 256 IPR001965 -
Seca4g08991 742 ProSitePatterns Zinc finger PHD-type signature. 212 255 IPR019786 -
Seca4g08991 742 FunFam Origin recognition complex subunit 1 660 742 - -
Seca4g08991 742 Gene3D - 155 400 IPR043151 -
Seca4g08991 742 ProSiteProfiles Zinc finger PHD-type profile. 209 258 IPR019787 -
Seca4g08991 742 ProSiteProfiles BAH domain profile. 268 383 IPR001025 GO:0003682
Seca4g08991 742 Gene3D - 463 659 IPR027417 -
Seca4g08991 742 FunFam Origin recognition complex subunit 1 275 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08991 Seca-Chr4 214263464 214268296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08991 4 736 Core DNA Replication Machinery Family AT4G14700 59.304 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca4g08991 AAA 6.9e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08991 K02603 - gmx:100798547 1193.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08991 4 214263464 214268296 Seca4g08991 4 214263464 214268296 ECH