Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08989 ATGGCAACGGCGTCTTCGCAGGCGCAGGGTGGTTATCATCAACCTTCCTCCATCGAGGAAGTTCGAACCCTTTGGATTGGGGATTTGCAGTATTGGGTCGATGAAACCTATCTCAGTCACTGCTTCGCTCACACCGGCGAGGTAGTTTCAATCAAAATCATACGCAACAAGATGACTGGGCAACCAGAGGGTTACGGTTTCGTTGAGTTTGTTTCTCACGCTGCAGCAGAAAGGGTTCTTCAGAGTTACAATGGGACCCAAATGCCCGGAACCGAACAAACTTTTCGGTTGAATTGGGCTTCTTTCGGTATTGGGGAACGTCGTCCCGATGCGGGTCCTGAACACTCCATCTTCGTGGGTGATCTTGCTCCTGATGTTACCGATTATCTTCTTCAGGAGACTTTTCGTGCTCATTACCCTTCCGTTCGGGGTGCTAAGGTTGTCACTGACCCTAACACTGGCCGCTCCAAGGGTTATGGTTTTGTTAAATTTTCTGATGAGAATGAAAGGAACCGTGCCATGACCGAAATGAATGGTGTTTATTGCTCCACTAGGCCTATGCGCATTAGTGCTGCTACTCCTAAGAAGACCAATGCTTTTCAACACCCATATGCTGCACCTGCTCCTAAAGGAATCTACTTGGCAGCAATATATCCCATCCCGGCGTACACTACCCCAGTGAATACAGTTCCACCAGATTATGATGTAAATAATACTACTCTTTTTGTTGGTAATTTGGATCTTAATGTCTCAGAAGAGGAGCTTAAGCAAAACTTTATGCAATTTGGAGAAATTGTCTCTTGCAAAATTCAGGCTGGCAAAGGATGTGGTTTTATTCAATTTGGGATCAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATGATAGGTCAACAAGTGATCCGAGTTTCTTGGGGTAGGACCCCAACAGCTAGACAGGACTTAGCTGGTGGCTGGGGACCACAGATGGATCCAAGTCAATGGAGTGCCTACTATGGGTATGGACAGGGTTATGAAGCCTATGCTTATGGGGCCACTCAGGATCCTTCAATGTATGCATATGCTGGCTATGCACAATATCCCCAACAGGTTGAAGGTGCTCAAGACGCATCAGCTTTGTGTGTACCTACCATGGAACAAAGGGAGGAGTTGTATGATCCCCTGGCAATGCCAGATGTTGATAAGTTAAATGCTGCATATCTCTCAGTACATGGAAGTGCCATTTTAGGGCGGTCCCTCTGGCACAAAACCTATTCTTCATCCTTACAGCAAGCATAG 1287 0.467 MATASSQAQGGYHQPSSIEEVRTLWIGDLQYWVDETYLSHCFAHTGEVVSIKIIRNKMTGQPEGYGFVEFVSHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRPMRISAATPKKTNAFQHPYAAPAPKGIYLAAIYPIPAYTTPVNTVPPDYDVNNTTLFVGNLDLNVSEEELKQNFMQFGEIVSCKIQAGKGCGFIQFGIRASAEEAIQKMQGKMIGQQVIRVSWGRTPTARQDLAGGWGPQMDPSQWSAYYGYGQGYEAYAYGATQDPSMYAYAGYAQYPQQVEGAQDASALCVPTMEQREELYDPLAMPDVDKLNAAYLSVHGSAILGRSLWHKTYSSSLQQA. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08989 428 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 15 315 - -
Seca4g08989 428 CDD RRM1_SECp43_like 23 103 - -
Seca4g08989 428 Gene3D - 105 202 IPR012677 -
Seca4g08989 428 SUPERFAMILY RNA-binding domain, RBD 21 197 IPR035979 GO:0003676
Seca4g08989 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 311 IPR000504 GO:0003723
Seca4g08989 428 FunFam Polyadenylate-binding protein RBP47B 103 205 - -
Seca4g08989 428 Gene3D - 226 317 IPR012677 -
Seca4g08989 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 305 IPR000504 GO:0003723
Seca4g08989 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 92 IPR000504 GO:0003723
Seca4g08989 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 182 IPR000504 GO:0003723
Seca4g08989 428 FunFam Polyadenylate-binding protein RBP47B 21 101 - -
Seca4g08989 428 SMART rrm1_1 240 307 IPR000504 GO:0003723
Seca4g08989 428 SMART rrm1_1 23 98 IPR000504 GO:0003723
Seca4g08989 428 SMART rrm1_1 116 190 IPR000504 GO:0003723
Seca4g08989 428 Gene3D - 21 101 IPR012677 -
Seca4g08989 428 FunFam polyadenylate-binding protein RBP45 222 319 - -
Seca4g08989 428 CDD RRM2_SECp43_like 114 193 - -
Seca4g08989 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 194 IPR000504 GO:0003723
Seca4g08989 428 SUPERFAMILY RNA-binding domain, RBD 216 340 IPR035979 GO:0003676
Seca4g08989 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 102 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08989 Seca-Chr4 214255326 214261015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08989 21 329 Eukaryotic Initiation Factors Gene Family AT2G23350 26.959 5.21e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08989 - - tpra:123894020 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03772 4 66341506 66344620 Seca4g08989 4 214255326 214261015 PCT