Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g08989 | ATGGCAACGGCGTCTTCGCAGGCGCAGGGTGGTTATCATCAACCTTCCTCCATCGAGGAAGTTCGAACCCTTTGGATTGGGGATTTGCAGTATTGGGTCGATGAAACCTATCTCAGTCACTGCTTCGCTCACACCGGCGAGGTAGTTTCAATCAAAATCATACGCAACAAGATGACTGGGCAACCAGAGGGTTACGGTTTCGTTGAGTTTGTTTCTCACGCTGCAGCAGAAAGGGTTCTTCAGAGTTACAATGGGACCCAAATGCCCGGAACCGAACAAACTTTTCGGTTGAATTGGGCTTCTTTCGGTATTGGGGAACGTCGTCCCGATGCGGGTCCTGAACACTCCATCTTCGTGGGTGATCTTGCTCCTGATGTTACCGATTATCTTCTTCAGGAGACTTTTCGTGCTCATTACCCTTCCGTTCGGGGTGCTAAGGTTGTCACTGACCCTAACACTGGCCGCTCCAAGGGTTATGGTTTTGTTAAATTTTCTGATGAGAATGAAAGGAACCGTGCCATGACCGAAATGAATGGTGTTTATTGCTCCACTAGGCCTATGCGCATTAGTGCTGCTACTCCTAAGAAGACCAATGCTTTTCAACACCCATATGCTGCACCTGCTCCTAAAGGAATCTACTTGGCAGCAATATATCCCATCCCGGCGTACACTACCCCAGTGAATACAGTTCCACCAGATTATGATGTAAATAATACTACTCTTTTTGTTGGTAATTTGGATCTTAATGTCTCAGAAGAGGAGCTTAAGCAAAACTTTATGCAATTTGGAGAAATTGTCTCTTGCAAAATTCAGGCTGGCAAAGGATGTGGTTTTATTCAATTTGGGATCAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATGATAGGTCAACAAGTGATCCGAGTTTCTTGGGGTAGGACCCCAACAGCTAGACAGGACTTAGCTGGTGGCTGGGGACCACAGATGGATCCAAGTCAATGGAGTGCCTACTATGGGTATGGACAGGGTTATGAAGCCTATGCTTATGGGGCCACTCAGGATCCTTCAATGTATGCATATGCTGGCTATGCACAATATCCCCAACAGGTTGAAGGTGCTCAAGACGCATCAGCTTTGTGTGTACCTACCATGGAACAAAGGGAGGAGTTGTATGATCCCCTGGCAATGCCAGATGTTGATAAGTTAAATGCTGCATATCTCTCAGTACATGGAAGTGCCATTTTAGGGCGGTCCCTCTGGCACAAAACCTATTCTTCATCCTTACAGCAAGCATAG | 1287 | 0.467 | MATASSQAQGGYHQPSSIEEVRTLWIGDLQYWVDETYLSHCFAHTGEVVSIKIIRNKMTGQPEGYGFVEFVSHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRPMRISAATPKKTNAFQHPYAAPAPKGIYLAAIYPIPAYTTPVNTVPPDYDVNNTTLFVGNLDLNVSEEELKQNFMQFGEIVSCKIQAGKGCGFIQFGIRASAEEAIQKMQGKMIGQQVIRVSWGRTPTARQDLAGGWGPQMDPSQWSAYYGYGQGYEAYAYGATQDPSMYAYAGYAQYPQQVEGAQDASALCVPTMEQREELYDPLAMPDVDKLNAAYLSVHGSAILGRSLWHKTYSSSLQQA. | 429 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g08989 | 428 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 15 | 315 | - | - | |
Seca4g08989 | 428 | CDD | RRM1_SECp43_like | 23 | 103 | - | - | |
Seca4g08989 | 428 | Gene3D | - | 105 | 202 | IPR012677 | - | |
Seca4g08989 | 428 | SUPERFAMILY | RNA-binding domain, RBD | 21 | 197 | IPR035979 | GO:0003676 | |
Seca4g08989 | 428 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 239 | 311 | IPR000504 | GO:0003723 | |
Seca4g08989 | 428 | FunFam | Polyadenylate-binding protein RBP47B | 103 | 205 | - | - | |
Seca4g08989 | 428 | Gene3D | - | 226 | 317 | IPR012677 | - | |
Seca4g08989 | 428 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 241 | 305 | IPR000504 | GO:0003723 | |
Seca4g08989 | 428 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 24 | 92 | IPR000504 | GO:0003723 | |
Seca4g08989 | 428 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 117 | 182 | IPR000504 | GO:0003723 | |
Seca4g08989 | 428 | FunFam | Polyadenylate-binding protein RBP47B | 21 | 101 | - | - | |
Seca4g08989 | 428 | SMART | rrm1_1 | 240 | 307 | IPR000504 | GO:0003723 | |
Seca4g08989 | 428 | SMART | rrm1_1 | 23 | 98 | IPR000504 | GO:0003723 | |
Seca4g08989 | 428 | SMART | rrm1_1 | 116 | 190 | IPR000504 | GO:0003723 | |
Seca4g08989 | 428 | Gene3D | - | 21 | 101 | IPR012677 | - | |
Seca4g08989 | 428 | FunFam | polyadenylate-binding protein RBP45 | 222 | 319 | - | - | |
Seca4g08989 | 428 | CDD | RRM2_SECp43_like | 114 | 193 | - | - | |
Seca4g08989 | 428 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 115 | 194 | IPR000504 | GO:0003723 | |
Seca4g08989 | 428 | SUPERFAMILY | RNA-binding domain, RBD | 216 | 340 | IPR035979 | GO:0003676 | |
Seca4g08989 | 428 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 22 | 102 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g08989 | Seca-Chr4 | 214255326 | 214261015 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g08989 | 21 | 329 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 26.959 | 5.21e-26 | 108 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g08989 | - | - | tpra:123894020 | 728.013 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca4g03772 | 4 | 66341506 | 66344620 | Seca4g08989 | 4 | 214255326 | 214261015 | PCT |