Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08983 ATGAATAGTTCGGGTTTAGGTGGTGGTTTTCTGGCTGGTCCCAGTGGGGGGATTTTGGACCTGGAATCTCCATTCCATAGGCACCAGCAGACACAGTTGGGTCACCCATGTCACCCACCAGTAACTAATCAACAACACATGAATATGATGAGTGGTTTGGAAAATGATCACCCGATTGGCCTGATTGAAGTGAAAAATTTGAATGCGGCATTGAATTATGGTAAAGGAAAGGCAGTTGCTTCTTCTAATCCTGCCAATAGTAACGATTTGAGTGAAGATGATGAACCAAGTTATGCAGAAGAGGGGAATTGCGAGAACTTGGATGGCGGCAAGGGCAAAAAAGGGTCTCCTTGGCAGCGAATGAAGTGGACAGACAATGTGGTTGGGCTTCTTATAGCAGTGGTGAGTTGTGTGGGTGATGATGGTACTATTGGTGGCATGGATGGTGGTTCTAAAAGGAAATCTGGTGTTTTACAAAAGAAGGGCAAGTGGAAAACTGTCTCCAAGATAATGATAAACAAGGGTTGTCATGTTTCGCCTCAGCAGTGTGAGGACAAATTCAATGACTTAAATAAGAGGTACAAGAGGTTAAATGAGATACTTGGAAGGGGCACTTGTTGCCAGGTGGTTGAGAATCCTGCACTGATGGATTCAATGCCTAACCTGTCAACTAAGGCCAAGGAAGATGTCAGGAAGATACTGAGTTCAAAACACCTGTTCTATAAGGAGATGTGTGCCTACCATAACGGGCAAAGGATACCAAATTCCTATGATCTTGACTTACAGGTTTATACTCTGGAACATGGGAGGGACTCAAGAGATAATAATGGCTCTGATGATGAAGATGATGATAACAACGAAAGCGATGATGATGAGTTGGATAATGAGATTAATATTAATGCACATGGGGATGGAGGGAGGATGGAGGAGTTCTGTGATAGAAATAAATCAAGTGAGGAGGATGGCCACTTTTGGCCGCGATCTGCTGGGATGGAAAAATTTGAGGTTGAAATGGCAAGGGTTTTTCAAGACCCTACAAAGTCAGCGTGGGAGCGAAGAGAGTGGATTAAGATGCAGATGTTGCAGCTTCAAGAGCAAAATGTCAGCTACCAGGCACAAGCTCTTGAACTTGAGAAACAAAGGTTTAAGTGGTTAAGATACTGCAGCAAGAAGGACAGGGAGCTGGAGAGGCTGAGGTTGGAGAACAAGAGGATGAATTTGGAAAATGAGCGCAGGATCTTGAAACTGAAGCAGAAAGAGCATGAGATTGATTGCAGTAGGCCTGAGAAGTCCTTAGACCCTGCCTCTCTTGGAATCAACAGGTCACAAGGGAGGGAACATATTAACTTGGCCAGACAGCAGTAG 1365 0.444 MNSSGLGGGFLAGPSGGILDLESPFHRHQQTQLGHPCHPPVTNQQHMNMMSGLENDHPIGLIEVKNLNAALNYGKGKAVASSNPANSNDLSEDDEPSYAEEGNCENLDGGKGKKGSPWQRMKWTDNVVGLLIAVVSCVGDDGTIGGMDGGSKRKSGVLQKKGKWKTVSKIMINKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTCCQVVENPALMDSMPNLSTKAKEDVRKILSSKHLFYKEMCAYHNGQRIPNSYDLDLQVYTLEHGRDSRDNNGSDDEDDDNNESDDDELDNEININAHGDGGRMEEFCDRNKSSEEDGHFWPRSAGMEKFEVEMARVFQDPTKSAWERREWIKMQMLQLQEQNVSYQAQALELEKQRFKWLRYCSKKDRELERLRLENKRMNLENERRILKLKQKEHEIDCSRPEKSLDPASLGINRSQGREHINLARQQ. 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08983 454 MobiDBLite consensus disorder prediction 436 454 - -
Seca4g08983 454 MobiDBLite consensus disorder prediction 268 325 - -
Seca4g08983 454 MobiDBLite consensus disorder prediction 277 294 - -
Seca4g08983 454 PANTHER F16F4.11 PROTEIN-RELATED 2 425 - -
Seca4g08983 454 Pfam Myb/SANT-like DNA-binding domain 120 246 IPR044822 -
Seca4g08983 454 Gene3D - 123 196 - -
Seca4g08983 454 MobiDBLite consensus disorder prediction 306 325 - -
Seca4g08983 454 MobiDBLite consensus disorder prediction 77 117 - -
Seca4g08983 454 Coils Coil 360 380 - -
Seca4g08983 454 MobiDBLite consensus disorder prediction 424 454 - -
Seca4g08983 454 Coils Coil 388 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08983 Seca-Chr4 214196306 214198519 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca4g08983 Myb_DNA-bind_4 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08983 - - gmx:100798932 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08983 4 214196306 214198519 Seca4g08983 4 214196306 214198519 ECH