Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08981 ATGACCGATCCCTACTTCTCCAATGGTTATTGGTTTGACCTCAATTCTCCATCACCACCACCTTCCTCTAACCAACCATTCTATTTCCATCATCATCACCACCACACCATCTCTTTCTCTCTTGATCATGAACCTTCTCTTCCTCCTACAAGAGAAGCCCTTCCTCTCCTTAACCTAAGCCCACCTGCAAAACGTGAAGATCTAGAATCTTCCTTTAGTGCCATGGAAGTGATCAACAAGAAGAAGGAGAAAGAAGTAACAAGCATATCAATATCCAACGAGGATGATGCAACAGCTGTGACGGTGGCTTTGCACTTAGGGCTTCCAACCATAACTTCAGCTGATTTAGCTTCAAATTTATACTCTTCCACAGAGATCTCAGATGATAAAGAAGAAAAAGCAGTGATGATGAGTACTACTACTATTGTTGCTAGTTCTGAGAGTGAGTATCCATCATCAAATAGTAGAATTAATCGGGGTCAGTATTGGATCCCTACCCCTTCTCAGATTCTGATTGGTCCAACACAGTTTTCATGCCCCCTTTGTTTCAAGACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTAAGGGGAACACAGCCAACAGCTATGCTAAGACTCCCATGTTATTGCTGTGCACCAGGATGCAAGAACAACATTGACCATCCAAGAGCAAAACCATTGAAGGACTTTAGAACCCTTCAAACACATTATAAGAGGAAGCATGGAATCAAGCCATTCATGTGTAGGAAGTGTTGCAAAGCATTTGCTGTGAGAGGTGATTGGAGGACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGTTCTTGTGGGTCCGATTTTAAGCATAAAAGGTCGCTTAAGGATCATATCAAGGCATTTGGAAATGGACATAAAGCTTATGGAATTGACGACTGTCTTGATCAAGATGATGAAGGAGGCTCTGAAATTGAGCAAGATAATGAATCTTGCCAGTTATAG 1023 0.4203 MTDPYFSNGYWFDLNSPSPPPSSNQPFYFHHHHHHTISFSLDHEPSLPPTREALPLLNLSPPAKREDLESSFSAMEVINKKKEKEVTSISISNEDDATAVTVALHLGLPTITSADLASNLYSSTEISDDKEEKAVMMSTTTIVASSESEYPSSNSRINRGQYWIPTPSQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDDCLDQDDEGGSEIEQDNESCQL. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08981 340 Gene3D Classic Zinc Finger 217 309 - -
Seca4g08981 340 PANTHER ZINC FINGER PROTEIN WIP2 31 336 IPR043584 GO:0003700|GO:0010468
Seca4g08981 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 204 IPR013087 -
Seca4g08981 340 SUPERFAMILY beta-beta-alpha zinc fingers 243 281 IPR036236 -
Seca4g08981 340 ProSitePatterns Zinc finger C2H2 type domain signature. 179 199 IPR013087 -
Seca4g08981 340 FunFam Zinc finger protein WIP2 230 312 - -
Seca4g08981 340 Gene3D Classic Zinc Finger 176 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08981 Seca-Chr4 214090041 214092956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08981 51 339 C2H2 Transcription Factor Family AT3G57670 61.392 2.75e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g08981 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08981 - - gmx:100789416 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03757 4 65893963 65896452 Seca4g08981 4 214090041 214092956 PCT