Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08976 ATGTCAACTAGTGCATTACGCTGTTTGGGATTTGCTTACAAGGATGAGCTCAGTGCATTTGAAAACTACAATGGTAATGATGATCATCCAGCCCACCAGCTTTTGCTTAATCCTTCCAATTATTCATCAATTGAAAGTGAACTTATTTTTGTTGGCTTGGATCCTCCTAGGGAGGAGGTATACCAAGCATTTGAAGACTGCAGAGCAGCTGGAATTCGTGTTATAGTTATAACTGGAGACAATAAGAACACTGCTGAAGCTATATGCCGTGAAATAGGTGTATTTGAACCCAATGAAGACATTAGTACAAGAAGTGTAACTGGTAGAGATTTTATGCATAAGCAAGATATTGTGAAGCTGCTCAAAGAGGAAGGGGAGGTGGTGGCCATGACTGGGGATGGCGTTAATGATGTGCCTGCCTTGAAGCTTGCAGACATTGGTGTGGCAATGAGCATTGCAGGGACAGAGCCATTTCAGAGGCAGGCACCAAGTCCAGCGTCTGTTACTACTGTGCCACAACCACTTGGGATTCGTCCTCGAGTGCGATCAAGAAGAGGGCAAGCCACAGACCCCCACAGTATTGCTGAGCGAGTAATTTTGGTTTGA 606 0.4472 MSTSALRCLGFAYKDELSAFENYNGNDDHPAHQLLLNPSNYSSIESELIFVGLDPPREEVYQAFEDCRAAGIRVIVITGDNKNTAEAICREIGVFEPNEDISTRSVTGRDFMHKQDIVKLLKEEGEVVAMTGDGVNDVPALKLADIGVAMSIAGTEPFQRQAPSPASVTTVPQPLGIRPRVRSRRGQATDPHSIAERVILV. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08976 201 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 60 IPR023299 GO:0000166
Seca4g08976 201 Gene3D - 113 156 IPR023214 -
Seca4g08976 201 Gene3D - 56 112 IPR023214 -
Seca4g08976 201 SUPERFAMILY HAD-like 47 161 IPR036412 -
Seca4g08976 201 PRINTS P-type cation-transporting ATPase superfamily signature 131 150 - -
Seca4g08976 201 PRINTS P-type cation-transporting ATPase superfamily signature 48 59 - -
Seca4g08976 201 PRINTS P-type cation-transporting ATPase superfamily signature 70 80 - -
Seca4g08976 201 Gene3D - 3 55 IPR023299 GO:0000166
Seca4g08976 201 Pfam haloacid dehalogenase-like hydrolase 49 145 - -
Seca4g08976 201 NCBIfam HAD-IC family P-type ATPase 53 151 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g08976 201 PANTHER CALCIUM-TRANSPORTING ATPASE 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08976 Seca-Chr4 213924817 213926665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08976 1 156 Primary Pumps ATPases(2) AT1G07670 67.213 1.88e-75 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08976 K01537 - gmx:100812151 268.085