Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08975 ATGGGCTCAATGAACTCAAACAACTGGCTTTCTTTCCCCCTTTCTCCAACTCATTCTTCTTTACCAGCTCATCTCCAAGCAACTCAATCTCATCAGTTTTCTCTTGGGACATTAGTCAATGAGAACATGGAAAGCCCTTTCCAAAATCATGATTGGAATCTGATTAATACTCACAGCAGCAACGAAGTTCCTAAGGTTGCAGATTTTCTTGGTGTGAGCAAGTCTGAGAATCAGTCAGATCTTGCAGCTTTTAATGAAATTCAATCCAATGATTCAGATTATCTCTTCACCAACAACAGTAGCCTATTGCCGATGCAAAACTCTGTGGTGGCTACTAATTCTAGCAGTTATGAGTATCAAGAAAATAGTGCTAACAATAACCTTCAGTCATTGACATTATCCATGGGAAGTGGTAAGGATTCAACATGTGAAACCAGTGGTGATAATAATAGTACTAATACTGTTGAAGCTGCACCTAGAAGAACTTTGGATACCTTTGGGCAGAGAACATCAATATACCGTGGTGTAACAAGACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGGAAAGGTCGCCAAGTTATCTCAGGTGGGTATGACAAAGAAGAGAAAGCAGCAAGGGCCTATGATTTAGCTGCACTCAAATACTGGGGGACATCTACCACTACCAACTTTCCCATCAGTAACTATGAAAAGGAATTGGAAGACATGAAGCACATGACTAGACAAGAATTTGTGGCCGCCATAAGAAGGAAGAGCAGTGGATTCTCAAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATTGGCAGGGTTGCAGGAAACAAAGATCTATATTTAGGAACTTTCAGTAAGTAA 924 0.4123 MGSMNSNNWLSFPLSPTHSSLPAHLQATQSHQFSLGTLVNENMESPFQNHDWNLINTHSSNEVPKVADFLGVSKSENQSDLAAFNEIQSNDSDYLFTNNSSLLPMQNSVVATNSSSYEYQENSANNNLQSLTLSMGSGKDSTCETSGDNNSTNTVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVISGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELEDMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSK. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08975 307 SMART rav1_2 172 244 IPR001471 GO:0003700|GO:0006355
Seca4g08975 307 SMART rav1_2 274 307 IPR001471 GO:0003700|GO:0006355
Seca4g08975 307 SUPERFAMILY DNA-binding domain 273 306 IPR016177 GO:0003677
Seca4g08975 307 CDD AP2 171 240 IPR001471 GO:0003700|GO:0006355
Seca4g08975 307 Pfam AP2 domain 172 230 IPR001471 GO:0003700|GO:0006355
Seca4g08975 307 PRINTS Ethylene responsive element binding protein signature 220 240 IPR001471 GO:0003700|GO:0006355
Seca4g08975 307 PRINTS Ethylene responsive element binding protein signature 173 184 IPR001471 GO:0003700|GO:0006355
Seca4g08975 307 FunFam AP2-like ethylene-responsive transcription factor ANT 171 240 - -
Seca4g08975 307 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 63 306 - -
Seca4g08975 307 ProSiteProfiles AP2/ERF domain profile. 172 238 IPR001471 GO:0003700|GO:0006355
Seca4g08975 307 SUPERFAMILY DNA-binding domain 171 240 IPR016177 GO:0003677
Seca4g08975 307 ProSiteProfiles AP2/ERF domain profile. 274 307 IPR001471 GO:0003700|GO:0006355
Seca4g08975 307 Gene3D AP2/ERF domain 172 240 IPR036955 GO:0003700|GO:0006355
Seca4g08975 307 Gene3D AP2/ERF domain 274 307 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08975 Seca-Chr4 213914450 213917879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08975 4 306 AP2-EREBP Transcription Factor Family AT1G51190 69.817 2.42e-155 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g08975 AP2 5.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08975 K09285 - gmx:100788471 543.888