LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g08973	ATGGACTCAGCAACTTCACCGCAGGCGGGGGAGGAGCTGGACCTAAACAAACTTAAAGCACTCAAAGTATTAGGAAAAGGAGCAATGGGCACCGTATTCCTTGTCCAACACAACACCTCCCAAAGCCACATGGCACTCAAAGTAGTTGACAAATCTTCCGTCCACGACGCTGACCGTCGTGCCCGTTGGGAAATCCACGTCCTCTCCCAATTATCCCATCCCTTCCTCCCTTCCCTTTTAGGCACCTTCGAAACGGATCACTTATTGGGCTGGGCCGTCCCTTACTGCCCCGGTGGCGACCTCAACGTCCTTCGTTACCGCCAAACCGATCGAGTCTTCTCCCCTACCGTGATCCGCTTCTACCTCGCTGAGATCCTCTGCGCTCTCGACCACCTCCATACCATGGGCATCGCTTATCGCGACCTTAAACCCGAAAACGTCCTCATTCACCACACCGGCCACGTCACCCTCACCGACTTCGACCTCTCTCGCAAGCTCAAACCAAAAACCGTCAAAACCATCATTTCCCTCGACGATTCCAAGGTACTTCCCGACACTCGCCGTAAATCTCGCCGGTGGTTGATCCCACTTGTTCCCCCACCACCCGACAGGAAGGCGCTGAAGAATAATGCCAAGTCCGCCCGAGTCAGCCCGGTGAGTCGACGCAAGGCGAGTTTCTGTCTCTCCAACGGCGAACGATCCAACTCGTTTGTCGGCACGGAGGAGTACGTCGCGCCGGAGGTAGTTCGTGGCGACGGTCACGAGTTCGCCGTCGATTGGTGGGGCCTTGGAGTGCTGACCTATGAGATGCTCTATGGGACGACGCCGTTTAAGGGGAAGAACAGGAAGGAAACGTTTCGAAACGTGCTGGTGAAGGAACCGGAGTTTGTGGGGAAGAAAACGGCGTTGACGGATCTTATTTCACGGTTGCTTGAAAAGGACCCCACTAAACGATTGGGTTACGTTAGAGGTGCCTGTGAGATCAAGGAGCATGAGTTCTTCAGAGGGGTGAAGTGGGACCTACTAACGGAGGTTGTGCGACCGCCGTTTATTCCGTCGAGAGATGACGCTGTTTTGACGGCGGATCGATTCGCTTCTGGGGTTGACATAAGGGAATATTTCAAGAGCTTGAAAAAACCGCCGTCGTTGCCACCTTCGCCGTCACCGTCTTATTCTGAGTTTCAGAAGAGTGTTTCTTTTGCAGAATTCTGA	1212	0.5396	MDSATSPQAGEELDLNKLKALKVLGKGAMGTVFLVQHNTSQSHMALKVVDKSSVHDADRRARWEIHVLSQLSHPFLPSLLGTFETDHLLGWAVPYCPGGDLNVLRYRQTDRVFSPTVIRFYLAEILCALDHLHTMGIAYRDLKPENVLIHHTGHVTLTDFDLSRKLKPKTVKTIISLDDSKVLPDTRRKSRRWLIPLVPPPPDRKALKNNAKSARVSPVSRRKASFCLSNGERSNSFVGTEEYVAPEVVRGDGHEFAVDWWGLGVLTYEMLYGTTPFKGKNRKETFRNVLVKEPEFVGKKTALTDLISRLLEKDPTKRLGYVRGACEIKEHEFFRGVKWDLLTEVVRPPFIPSRDDAVLTADRFASGVDIREYFKSLKKPPSLPPSPSPSYSEFQKSVSFAEF.	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g08973	403	FunFam	Serine/threonine-protein kinase OXI1	100	168	-	-
	Seca4g08973	403	ProSitePatterns	Protein kinases ATP-binding region signature.	24	47	IPR017441	GO:0005524
	Seca4g08973	403	ProSiteProfiles	AGC-kinase C-terminal domain profile.	335	403	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Seca4g08973	403	SMART	serkin_6	18	334	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g08973	403	Gene3D	Phosphorylase Kinase; domain 1	18	99	-	-
	Seca4g08973	403	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	137	149	IPR008271	GO:0004672\|GO:0006468
	Seca4g08973	403	FunFam	Serine/threonine-protein kinase OXI1	232	353	-	-
	Seca4g08973	403	ProSiteProfiles	Protein kinase domain profile.	18	334	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g08973	403	SUPERFAMILY	Protein kinase-like (PK-like)	16	392	IPR011009	-
	Seca4g08973	403	Pfam	Protein kinase domain	20	171	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g08973	403	Pfam	Protein kinase domain	229	334	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g08973	403	Gene3D	Transferase(Phosphotransferase) domain 1	231	353	-	-
	Seca4g08973	403	PANTHER	FLIPPASE KINASE 1-RELATED	11	355	-	-
	Seca4g08973	403	Gene3D	Transferase(Phosphotransferase) domain 1	100	170	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g08973	Seca-Chr4	213822075	213823286	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g08973	11	403	AGC Kinase Gene Family	AT3G20830	61.235	1.96e-157	448

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Seca4g08973		Pkinase	2.4e-35	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g08973	-		K08286	mof:131149664	530.02