Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08970 ATGGATTCTTCTGTTGTCATGGGTAGCACAATTTTGGAGCCTCGTAATGATATGGAATTTGAATCTCATGAAGCTGCATATGCATTTTACAAAGAATATGCTAAGTCTGCTGGGTTTGGTACTGCTAAGTTGAGCAGTCGTCGGTCCAGGGCATCGAAGGAATTTATTGATGCCAAATTTTCATGTATAAGATATGGTAATAAGCAGCAATCTGATGATGCAATTAATCCTCGCCCTTCTCCAAAAATTGGTTGTAAAGCTAGCATGCATGTGAAGAGAAGACAAGATGGTAAGTGGTATGTCTATAGCTTTGTGAAGGAGCATAACCATGAGCTTCTACCTGCTCAAGCTCATTTTTTTCGGAGTCACAGGAGTTCTGATCCACTAGGTAATGATGTTCGGATGCGAAGGCGGAAGAACTCAACTGCAGTTTGTAAATTATTTAGTGCATATCAGAATGTTGATTGTTTAGAGAACTTTATGAAACATCAACATGATAAAGGACGAAGTTTGGTTTTAGAAGCAGGGCATGCCCAATTGCTTCTTGAACTCTTCATGCACATGCAGGAAGAGAATCCAAAATTCTTCTATGCAGTTGATTTGAATGAAGAGCATCGACTGAGAAATGTGTTCTGGGTTGATGCTAAAGGGTTGGAGGATTTTGCTTACTTTGCTGATGTTGTTTCTTTTGACACAACATATTTTACAAGCAAGTATAAAATACCATTGGTACTTTTCATTGGAGTAAACCATCACATTCAACCAATATTGCTTGGTTGTGCTTTGATTGCTGATGAGACAGTATATACTTTTGCCTGGTTACTGCAAACATGGTTAATAGCAATGGGGGAACGAGCTCCACAAGTGATTCTCACTGACCAGAATGAGGCTATTAAAGCAGCTGTTGCTGCTGTTCTTCCAGGAACACGTCATTGTTTTTGTTTGTGGCATATTTTGGAAAAGATACCAAAACAACTTGAATTTTTAAGTGCGTGGCATGATAACTTTATGGAAAAATTTAACAAATGTATATATAAATCATGGACAGAAGAGCAATTTGAAAAGCGATGGTGGAAGTTGGTTGACAGGTTCAACCTTAGAGATGTGGAATGGGTCCAATCCTTGTATGATGATCGTATATGTTGGGTGCCAACTTTTATGAGAGATATTTCTTTTGCTGGCTTGTCTACTAGTTTGCGCTCAGAGAGTTTAAATTCCCTGTTTGACAACTATGTCCAAGTTGACACTTCATTGAAAGAATTTATAGAACAGTACCGTGTGATTCTTGAAGACAGGCATGAAGAGGAAGCCAAAGCAAATTTTGATGCTTGGCATGAAACACCTGAATTGAAGTCTCCTTCTCCTTTTGAAAAACAAATGTTATTAGTATACACACATGAAATTTATAAAAAATTTCAGGTTGAGGTTTTGGGTGCTGCTGCTTGCCATCTTAAGAAAGAAAATGAAGGTGTGACTACTATTTATAATGTGAAAGACTTCGAAAATAATCAAAACTATATTGTAGAATGGAACACATCAAACTCAGATATATGTTGTTCATGTCACTTGTTTGAATATAAAGGCTACCCTTGTAGACATGCTATTGTTGTTCTACAAATGTCTGGTGTTTTCAGCATCCCACCAAAGTATATTTTGCAAAGATGGACAAATGCTGCTATGAGCAGGCATCCAATTGGTGAAAAATTGGAAGAGGTTCAATCCAAGGTCCGGAGATTCAATGATTTATGTAGACGAGCGATTATATTGGGTGAAGAAGGATCTTTGTCACAAGATAGTTACTATATTGCTTTAGGTGCCATAAGTGAAGCTCTAAAGCAATGTGCAAATTTGAACAACTGTGTTGAGAATGGTATGAGACCTGATGCCTCAACTACCCATCTTGTTTGCAATGTTGAGGAAGAGTATCAATCTATTATTTCATCTAACAACAAGGTCCCTGATCCAAAAATGAATATGGGTAAGAAGGCTGCAAGGACTGGTGTAGCTGGTAGGAGTCTAGGAAGTGTTGAAAATATTGAAGGAAATAAAGGAAAGGTACCTCAGCTTGAAGCAATGAGTGGGAAAGATGGTTTTCAACAAATGGAGCCGACTGATCTGAGGTCACATAATGTCCTGCCAATGCAGTTTCAGAGTATGGTGCCAGCTCTATTTCATAATGTTTCATCACCGTTTCATACTGCAGCTTCAACTCATTTGCATGAAAATCGTCTTCCTCGTTAG 2241 0.382 MDSSVVMGSTILEPRNDMEFESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRSSDPLGNDVRMRRRKNSTAVCKLFSAYQNVDCLENFMKHQHDKGRSLVLEAGHAQLLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDAKGLEDFAYFADVVSFDTTYFTSKYKIPLVLFIGVNHHIQPILLGCALIADETVYTFAWLLQTWLIAMGERAPQVILTDQNEAIKAAVAAVLPGTRHCFCLWHILEKIPKQLEFLSAWHDNFMEKFNKCIYKSWTEEQFEKRWWKLVDRFNLRDVEWVQSLYDDRICWVPTFMRDISFAGLSTSLRSESLNSLFDNYVQVDTSLKEFIEQYRVILEDRHEEEAKANFDAWHETPELKSPSPFEKQMLLVYTHEIYKKFQVEVLGAAACHLKKENEGVTTIYNVKDFENNQNYIVEWNTSNSDICCSCHLFEYKGYPCRHAIVVLQMSGVFSIPPKYILQRWTNAAMSRHPIGEKLEEVQSKVRRFNDLCRRAIILGEEGSLSQDSYYIALGAISEALKQCANLNNCVENGMRPDASTTHLVCNVEEEYQSIISSNNKVPDPKMNMGKKAARTGVAGRSLGSVENIEGNKGKVPQLEAMSGKDGFQQMEPTDLRSHNVLPMQFQSMVPALFHNVSSPFHTAASTHLHENRLPR. 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08970 746 Pfam FAR1 DNA-binding domain 29 114 IPR004330 -
Seca4g08970 746 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 616 IPR031052 GO:0006355
Seca4g08970 746 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
Seca4g08970 746 Pfam MULE transposase domain 227 320 IPR018289 -
Seca4g08970 746 SMART 26again6 517 544 IPR006564 GO:0008270
Seca4g08970 746 Pfam SWIM zinc finger 512 540 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08970 Seca-Chr4 213761998 213766677 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g08970 MULE 3e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08970 - - gmx:100805273 1392.1