Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08969 ATGGATTCAGATCTTCAGCCACATCAACAGATAAATTCCTCTGGTTTGACACGTTACAGATCAGCACCGAGTTCTTATTTCAACAACATCATTGACAGAGAGTTCTACGAGCACATTTTCAATCGACCTTCGAGCCCTGAAACAGAGCGAATTTTCTCGCGGTTTGTCAACAGTTTTGGGGGTGATGGTGGTTCAGCAGCAGTAGCAGAAGAACAAGAAGATTCGCTAACTCAAAAAATCTCAGTAGCTGATTGTGGAGTAGTGAAGGAAGAGATTAATAACCAGCATGATCAGGGTATGCATTCCACCATCAATAATGAACAAGTGATTCTACAACAGAGTAACATCAATGATTATAACTCTGCAAATACTGCAAATCATGGATTTTACCAAAGCTCTGCAAGACCACCTTTGCCAAATCAGAATATGGATGGAAATTATTCTTTGGGAGTTAATCGGTTGCAACAGATGAAAACTGGTGGAGGACATAATTCTAATCTTATCAGGCATAGTAGTTCACCTGCAGGACTATTTTCCCAAATCAACATTGAAAATGGGTTTGTTAGTATGAGAGGCATGGGAACTTTAGGAGCTGTGAATAACTCAGTGGAAGATGCAAAATTTTCCACTGCAAGGAGGTTGAAGAATCCATCAAACTACTCATCAGGGAGAATGTCGTCAATAGCTGAAATTGGGGATAAAGGGAATATAGAAAGCAATCAAGACAGTGAAGCTTTTGCTGAAACCAATGGTAATGATTTTATCTCAGGTTTCCCTGTTGGTCCATGGGATGATTCTGCAATTATGTCTGACAACAATGTCAGTGGTCTGAAAAGGTTTAGGGATAATGATGCAAAACCATTTTCTGGTTTAAATGCAGCTGAGACTCAGAATGAAACAGGACAATCTCCTTCTCCTTTGGCTCATCACTTGAGTTTGCCAAATACTTCAGCTGAAATGGCAGCTATTGAGAAGTTTCTTCAATTCTCAGATTCTGTTCCATGCAAAATTCGTGCCAAGCGAGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGGACTAAAATTAGTGAGCGTATGAGGAAACTACAAGATCTTGTCCCAAACATGGACAAGCAAACGAACACAGCAGACATGTTGGACTTGGCTGTGGATTACATTAAAGACCTTCAAAAGCAAGTTGAGACGCTTTTAGACTGTCAAGCAAAGTGTACGTGTCCACTCAAGCAACAACAATAA 1248 0.4062 MDSDLQPHQQINSSGLTRYRSAPSSYFNNIIDREFYEHIFNRPSSPETERIFSRFVNSFGGDGGSAAVAEEQEDSLTQKISVADCGVVKEEINNQHDQGMHSTINNEQVILQQSNINDYNSANTANHGFYQSSARPPLPNQNMDGNYSLGVNRLQQMKTGGGHNSNLIRHSSSPAGLFSQINIENGFVSMRGMGTLGAVNNSVEDAKFSTARRLKNPSNYSSGRMSSIAEIGDKGNIESNQDSEAFAETNGNDFISGFPVGPWDDSAIMSDNNVSGLKRFRDNDAKPFSGLNAAETQNETGQSPSPLAHHLSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVETLLDCQAKCTCPLKQQQ. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08969 415 Pfam Helix-loop-helix DNA-binding domain 348 394 IPR011598 GO:0046983
Seca4g08969 415 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 80 405 - -
Seca4g08969 415 FunFam Transcription factor bHLH130 family 344 413 - -
Seca4g08969 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 405 IPR036638 GO:0046983
Seca4g08969 415 MobiDBLite consensus disorder prediction 290 309 - -
Seca4g08969 415 MobiDBLite consensus disorder prediction 286 309 - -
Seca4g08969 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 393 IPR011598 GO:0046983
Seca4g08969 415 Gene3D - 344 415 IPR036638 GO:0046983
Seca4g08969 415 SMART finulus 349 399 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08969 Seca-Chr4 213678976 213682647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08969 8 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.028 3.04e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g08969 HLH 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08969 - - gmx:100805812 561.222