LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g08950	ATGCATTGTGAACTTAGAGTTCCTCACCAGAAATTGAATTCCCAAATTGTGTTCCATCTTTACTTCCGAAATTGTGTATTCCGTCTTCGTTCAATTGCTGGAAGGCAAGGCAGGAATTTCCATTTCGTTCAATTGTCGATGGATAATCTGAATGAAGTTCCAATATGTAATTTGGAAGATAACAAAGATATGGGCAACGATGTTGGTTCTAATGATAGTGTTAGTGGAGATCATACTAATAATGATGAAGAAAATGATAGTGGTAATAGAGAACCTAATGATAATGGAGATACCCATAATAATGATGAAAGAAATGAGTCACCAATGGTTGATGTTGGAGGTGATGTGTGTAAAAGGATAACAGAATTGACTGTTGATGATATACTAGGATTAGAGTTTGGATCTCAAAAGGAAGCATATGAATTTTACAATCAATATGCTAAAGCTCACGGATTTGTGATAAGGAAAGATGAGATAAAAAGGGATGTTAGGGGTAACATTGTAATGCGGCAGTTTGTATGCAACAGAGAAGGATTGAGGAACAAAAGGCATTTGATGAGGTTAGATCGAAAAAGGGATCATAGAGCAATCACTCGCACTAATTGTGAAGCTAAATTACGAATACGCTTCAATCGAAAGAAATCAAATTGGAGAGTGGTGTCCTTTGAGGAGGCTCATAACCATGAGCTAGCCCCACCTAGGTTTGTGCATTTACATTCTGCATATCATAAGTTGACGGATGGAGATAAGGCTCAGGTGGATAGCTTACATGCTCATGGTGTGAGAACGTGTCACATTATGAGTTACATGTTGGCTCAAAAAGGGGGGGCAGCACATGATTCCACGCTGTTTGCAGAATTTAGGGCTGATGACAAAGGTAAATTGAAGCATCTTTTTTGGGCGGATGGGATGAGCATATCTGATTTTCATTGTTTTGGGGATGTTGTTGCATTTGATACAACATATAGGAAGAATAGGTACAATTATCCATTGGTAATATTTTCTGGGTGCAATCACCATTCCCAAACAACTATTTTTGGATGTGCTTTGGTTTCTGACGAAACTACTACAACATACAAATGGGTTTTAGAAGCTTTTCTGATTGCAATGGGACATAAATGCAACATCCCATAA	1134	0.3792	MHCELRVPHQKLNSQIVFHLYFRNCVFRLRSIAGRQGRNFHFVQLSMDNLNEVPICNLEDNKDMGNDVGSNDSVSGDHTNNDEENDSGNREPNDNGDTHNNDERNESPMVDVGGDVCKRITELTVDDILGLEFGSQKEAYEFYNQYAKAHGFVIRKDEIKRDVRGNIVMRQFVCNREGLRNKRHLMRLDRKRDHRAITRTNCEAKLRIRFNRKKSNWRVVSFEEAHNHELAPPRFVHLHSAYHKLTDGDKAQVDSLHAHGVRTCHIMSYMLAQKGGAAHDSTLFAEFRADDKGKLKHLFWADGMSISDFHCFGDVVAFDTTYRKNRYNYPLVIFSGCNHHSQTTIFGCALVSDETTTTYKWVLEAFLIAMGHKCNIP.	378

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g08950	377	MobiDBLite	consensus disorder prediction	77	109	-	-
	Seca4g08950	377	Pfam	FAR1 DNA-binding domain	141	231	IPR004330	-
	Seca4g08950	377	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	128	374	IPR031052	GO:0006355
	Seca4g08950	377	MobiDBLite	consensus disorder prediction	61	112	-	-
	Seca4g08950	377	Pfam	MULE transposase domain	315	370	IPR018289	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g08950	Seca-Chr4	213264490	213266373	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca4g08950		FAR1	1.1e-23	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g08950	-		-	ccaj:109792835	384.8