Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08936 ATGGATTCCGAGGACGATATGCACGACGCTAACGATGTCGAGTCCCTTGACGACGATTTCTACAGTGGCGAAACCGAGGATGCTCCCATGGATTACTACAGCGACTATGATGATGAGGCCGATGATTACTTCGATGATGCCGACGATTCCGACCGGATTGAGTCTCGCCGACCGGAGATTTACGGATCCCTTTCTGGATTTCAGCAAAATTTTACTATATTGAAGGAATCAGATATCAGGCAAAGGCAGGAAGATGATATCACTAGAGTAGCAACAGTTCTTTCCATACCAAGAGTTTCTGCAAGCATACTTCTTCGTCACTATAATTGGAGTGTAAGTAAAGTGCATGATGCTTGGTTTGCTGATGAAGATCAAGTCCGAAAAGTAGTTGGTTTGTTGGAGAAGCCAGTTTTCCAGAATCCTTATCCTAAAGAGTTTACATGCGGCATCTGTTTTGAAAATTATCCCCGTGCTAAGATTGAAACTGCTACATGTGGTCATCCCTACTGCTTTTCATGCTGGGCAGGATATATTGGCACTTCAATTAATGATGGTCCGGGATGTTTGATGTTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTTTTAGCATCTGATGAAGATAAAGAGAAGTATGATCGTTACCTTCTTAGATCTTATATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGCAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGATTGTGGCACTGTGGCCAAGTGGATTTTGAAAAACAGTGCAGAATCTGAAAATATGAACTGGATACTTGCAAACTCAAAGCCATGTCCCAAGTGCAAGAGACCGATTGAAAAAAACCAAGGGTGCATGCATATGACATGCACTCCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGTTTCTATGCTTGCAATCGTTATGAAGCAGCGAAACAAGAGGGGGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGGTACACTCATTATTATGAGCGGTGGGCTAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACCGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAGCCTGAGTCACAGCTTAAGTTCATAACCGAGGCCTGGTTACAGATAGTTGAATGCAGGCGAGTGCTGAAGTGGACGTATGCATATGGGTACTATTTACCTGAGCATGAACATGCTAAAAAACAGTTCTTCGAGTACTTACAAGGTGAGGCGGAATCTGGTTTGGAGAGGCTTCATCAATGTGCTGAAAAGGAACTCCAACTATTTCTCAATGCTGATGGCCCATCTAGAGAATTCAACGACTTCCGCACAAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTAGCTGATGTGGATAGCAATGGAGCTGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGGAACTATTCGAGCTAGTATGTCTAGCAGAATGACTGATGATAATCATTGGTCTTGTGAGCATTGTACCTATGCAAATGTCAAATCTGCCACCACATGCCAGATGTGCAATCAACAGCGTCGATGA 1800 0.4361 MDSEDDMHDANDVESLDDDFYSGETEDAPMDYYSDYDDEADDYFDDADDSDRIESRRPEIYGSLSGFQQNFTILKESDIRQRQEDDITRVATVLSIPRVSASILLRHYNWSVSKVHDAWFADEDQVRKVVGLLEKPVFQNPYPKEFTCGICFENYPRAKIETATCGHPYCFSCWAGYIGTSINDGPGCLMLRCPDPTCGAAVGQDMINLLASDEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDSNGAASSKATSSKNAAGSSKGRGGRGKGTIRASMSSRMTDDNHWSCEHCTYANVKSATTCQMCNQQRR. 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08936 599 MobiDBLite consensus disorder prediction 532 568 - -
Seca4g08936 599 SMART zf_4 573 597 IPR001876 -
Seca4g08936 599 MobiDBLite consensus disorder prediction 1 49 - -
Seca4g08936 599 FunFam RBR-type E3 ubiquitin transferase 280 530 - -
Seca4g08936 599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 232 IPR013083 -
Seca4g08936 599 MobiDBLite consensus disorder prediction 532 549 - -
Seca4g08936 599 ProSiteProfiles Zinc finger RanBP2 type profile. 571 599 IPR001876 -
Seca4g08936 599 SUPERFAMILY Ran binding protein zinc finger-like 571 598 IPR036443 -
Seca4g08936 599 SMART ibrneu5 217 279 IPR002867 GO:0008270
Seca4g08936 599 SMART ibrneu5 283 353 IPR002867 GO:0008270
Seca4g08936 599 ProSitePatterns Zinc finger RanBP2-type signature. 575 594 IPR001876 -
Seca4g08936 599 CDD BRcat_RBR_ANKIB1 224 288 - -
Seca4g08936 599 ProSiteProfiles Zinc finger RING-type profile. 148 192 IPR001841 -
Seca4g08936 599 Gene3D - 569 599 - -
Seca4g08936 599 Gene3D - 275 530 - -
Seca4g08936 599 MobiDBLite consensus disorder prediction 1 48 - -
Seca4g08936 599 Pfam Ariadne domain 366 528 IPR045840 -
Seca4g08936 599 SUPERFAMILY RING/U-box 144 229 - -
Seca4g08936 599 Pfam IBR domain, a half RING-finger domain 296 344 IPR002867 GO:0008270
Seca4g08936 599 Pfam IBR domain, a half RING-finger domain 217 279 IPR002867 GO:0008270
Seca4g08936 599 CDD RING-HC_ARI6-like 145 206 - -
Seca4g08936 599 SUPERFAMILY RING/U-box 298 346 - -
Seca4g08936 599 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 78 445 IPR031127 GO:0004842|GO:0016567
Seca4g08936 599 FunFam RBR-type E3 ubiquitin transferase 143 231 - -
Seca4g08936 599 SUPERFAMILY RING/U-box 217 286 - -
Seca4g08936 599 CDD Rcat_RBR_ARI7-like 302 356 - -
Seca4g08936 599 ProSiteProfiles TRIAD supradomain profile. 144 357 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08936 Seca-Chr4 212893284 212901215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08936 17 598 ARIADNE family AT1G65430 70.034 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08936 K11968 - gmx:100810427 1128.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03706 4 64712565 64720536 Seca4g08936 4 212893284 212901215 PCT