LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g08936	ATGGATTCCGAGGACGATATGCACGACGCTAACGATGTCGAGTCCCTTGACGACGATTTCTACAGTGGCGAAACCGAGGATGCTCCCATGGATTACTACAGCGACTATGATGATGAGGCCGATGATTACTTCGATGATGCCGACGATTCCGACCGGATTGAGTCTCGCCGACCGGAGATTTACGGATCCCTTTCTGGATTTCAGCAAAATTTTACTATATTGAAGGAATCAGATATCAGGCAAAGGCAGGAAGATGATATCACTAGAGTAGCAACAGTTCTTTCCATACCAAGAGTTTCTGCAAGCATACTTCTTCGTCACTATAATTGGAGTGTAAGTAAAGTGCATGATGCTTGGTTTGCTGATGAAGATCAAGTCCGAAAAGTAGTTGGTTTGTTGGAGAAGCCAGTTTTCCAGAATCCTTATCCTAAAGAGTTTACATGCGGCATCTGTTTTGAAAATTATCCCCGTGCTAAGATTGAAACTGCTACATGTGGTCATCCCTACTGCTTTTCATGCTGGGCAGGATATATTGGCACTTCAATTAATGATGGTCCGGGATGTTTGATGTTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTTTTAGCATCTGATGAAGATAAAGAGAAGTATGATCGTTACCTTCTTAGATCTTATATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGCAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGATTGTGGCACTGTGGCCAAGTGGATTTTGAAAAACAGTGCAGAATCTGAAAATATGAACTGGATACTTGCAAACTCAAAGCCATGTCCCAAGTGCAAGAGACCGATTGAAAAAAACCAAGGGTGCATGCATATGACATGCACTCCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGTTTCTATGCTTGCAATCGTTATGAAGCAGCGAAACAAGAGGGGGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGGTACACTCATTATTATGAGCGGTGGGCTAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACCGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAGCCTGAGTCACAGCTTAAGTTCATAACCGAGGCCTGGTTACAGATAGTTGAATGCAGGCGAGTGCTGAAGTGGACGTATGCATATGGGTACTATTTACCTGAGCATGAACATGCTAAAAAACAGTTCTTCGAGTACTTACAAGGTGAGGCGGAATCTGGTTTGGAGAGGCTTCATCAATGTGCTGAAAAGGAACTCCAACTATTTCTCAATGCTGATGGCCCATCTAGAGAATTCAACGACTTCCGCACAAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTAGCTGATGTGGATAGCAATGGAGCTGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGGAACTATTCGAGCTAGTATGTCTAGCAGAATGACTGATGATAATCATTGGTCTTGTGAGCATTGTACCTATGCAAATGTCAAATCTGCCACCACATGCCAGATGTGCAATCAACAGCGTCGATGA	1800	0.4361	MDSEDDMHDANDVESLDDDFYSGETEDAPMDYYSDYDDEADDYFDDADDSDRIESRRPEIYGSLSGFQQNFTILKESDIRQRQEDDITRVATVLSIPRVSASILLRHYNWSVSKVHDAWFADEDQVRKVVGLLEKPVFQNPYPKEFTCGICFENYPRAKIETATCGHPYCFSCWAGYIGTSINDGPGCLMLRCPDPTCGAAVGQDMINLLASDEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDSNGAASSKATSSKNAAGSSKGRGGRGKGTIRASMSSRMTDDNHWSCEHCTYANVKSATTCQMCNQQRR.	600

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca4g08936	599	MobiDBLite	consensus disorder prediction	532	568	-	-
Seca4g08936	599	SMART	zf_4	573	597	IPR001876	-
Seca4g08936	599	MobiDBLite	consensus disorder prediction	1	49	-	-
Seca4g08936	599	FunFam	RBR-type E3 ubiquitin transferase	280	530	-	-
Seca4g08936	599	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	143	232	IPR013083	-
Seca4g08936	599	MobiDBLite	consensus disorder prediction	532	549	-	-
Seca4g08936	599	ProSiteProfiles	Zinc finger RanBP2 type profile.	571	599	IPR001876	-
Seca4g08936	599	SUPERFAMILY	Ran binding protein zinc finger-like	571	598	IPR036443	-
Seca4g08936	599	SMART	ibrneu5	217	279	IPR002867	GO:0008270
Seca4g08936	599	SMART	ibrneu5	283	353	IPR002867	GO:0008270

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g08936	Seca-Chr4	212893284	212901215	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g08936	17	598	ARIADNE family	AT1G65430	70.034	0.0	840

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g08936	K11968		-	gmx:100810427	1128.62

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca4g03706	4	64712565	64720536	Seca4g08936	4	212893284	212901215	PCT

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