Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08901 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCGGCAACGGTGATTTGTTGCGCGGATGAGGCGGCTTTGTGTGCCAAATGTGATGTTGAAGTTCATGCTGCAAACAAACTTGCAAGCAAGCATCAGAGGCTTCTTCTTCAATGTCTATCAAACAAACTTCCCAAATGTGACATATGCCAAGTTGAAAAGACAGCTTTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGATTGTGATGAACCAATTCATTCAGCTGGTAGCCTTTCTGCAAACCACCAGCGCTTCCTTGCTACTGGTATCCGAGTGGCCATGAATTTTAATTGCACCAAAGACACTGAAAAAACTCACTTGGAGGAGCCACCTAATAGGAATGCACAGCAAGTTTCTACAAAAATTCCTTCTCAGGAAGTGCCTAACTTCACATCCTCTTGGGCTGTTGATGACTTATTGGAATTGACAGGCTTTGAATCACCTGACAAAAAGGAATTTGGAGAGCTGGAATGGCTCACAGATGAGGGTCTTTTTGGTGAACAATTTACTCAGGAAGCATTGGCTGTGGCTGAAGTCCCTCAGCTTCCAGTAACTCATACTAGCAGTGATGTTGCCTCATACAGAACCTCCAAGTCCTACATGTCTCACAAAAAGCCTAGGATTGAAGTCCTAAACAATGATGAGGAAGATGATGAGTATTTCACTGTGCCTGATCTTGGCTGA 723 0.4343 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPKCDICQVEKTAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVAMNFNCTKDTEKTHLEEPPNRNAQQVSTKIPSQEVPNFTSSWAVDDLLELTGFESPDKKEFGELEWLTDEGLFGEQFTQEALAVAEVPQLPVTHTSSDVASYRTSKSYMSHKKPRIEVLNNDEEDDEYFTVPDLG. 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08901 240 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca4g08901 240 CDD Bbox1_BBX-like 5 47 - -
Seca4g08901 240 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Seca4g08901 240 Pfam B-box zinc finger 52 96 IPR000315 GO:0008270
Seca4g08901 240 SMART bboxneu5 52 100 IPR000315 GO:0008270
Seca4g08901 240 SMART bboxneu5 4 47 IPR000315 GO:0008270
Seca4g08901 240 Gene3D Classic Zinc Finger 1 93 - -
Seca4g08901 240 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
Seca4g08901 240 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08901 Seca-Chr4 212235448 212237627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08901 1 163 Orphan Transcription Factor Family AT1G06040 61.628 1.46e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Seca4g08901 zf-B_box 7.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08901 - - vun:114183169 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03676 4 63558212 63558589 Seca4g08901 4 212235448 212237627 PCT