Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08896 ATGATGGATAAGGACAAATCTCTCGGTATTGGCGGTGGTTTTCCACCTCCATCAGGTCGTTATTCTGGTTACTCACCCTCTGCTAGTGCGTTTAATGTGAAATCTGAACCTTCTTCATCGTATCCTCCACTTGTTCCTGGAACCAGCTCAGATTCCAGTGGATTTAGCCATGATATTAGCAGAATGCCTGATAATCCCCCGAGGAATAGAGGTCATAGGCGTGCTCATTCTGAGATTCTCACCTTGCCCGATGATATTAGCTTTGATAGTGATCTTGGTGTAGTTGGTGGTGCTGATGGGCCTTCATTCTCTGATGATACTGAGGAAGATTTACTGTCCATGTACCTTGATATGGATAAGTTCAATTCATCATCTGCTACATCCACATTTCAAATGGGTGAGCCGTCTAATGCTGCAATGGCAGCATCGGCCGGAGGACCAACATCGGGAGCACCCACCTCTTCTGCAGAAAACATTGTTATTGGTACTAATGAAAGGCCCAGAGTTAGACACCAGCATAGCCAATCCATGGATGGGTCAACGACCATCAAACCTGAGATGCTAGTCTCAGGTTCAGAAGACATGTCTGCAGCTGATTCCAAAAAAGCAATGTCAGCAGCCAAGCTTGCAGAACTTGCCTTGATTGACCCCAAGCGAGCAAAAAGGATATGGGCAAATAGACAGTCTGCTGCAAGGTCAAAAGAGAGGAAGATGCGCTACATTGCTGAGCTTGAAAGGAAGGTGCAGACATTGCAAACAGAAGCAACGTCTTTGTCTGCACAATTAACTCTCTTGCAGAGAGATACAAACGGACTGAATTCTGAGAACAGTGAGCTAAAGCTGCGGTTGCAAACCATGGAGCAACAAGTTCACTTGCAAGATGCATTAAATGATGCATTAAAAGAAGAAATTCAGCATTTGAAAATACTGACTGGGCAAGCCATGCCACCTAATGGAGGACCTATGATGAACTTTGCTTCTTTTGGAGGGGGCCAGCAATTCTATCCCAATAATCATGCCATGCACACTCTTTTAGCTGCCCAACAGTTTCAACAGCTCCAAATTCATCCTCAGAAACAGCAGCAGCAGCAGCATCAGTTTCAGCAACAAATACAACAACAAATGCAGCAGCAGCATCAGGAACAACAACATCAACAATCAGGGGACATGAAAATGAGAGCAGCTTCTCCAATCCCCAAAGATAATGCTTCATCAGATGTAAATCCTTCAACGGCCAAGGATTGTTGA 1248 0.4487 MMDKDKSLGIGGGFPPPSGRYSGYSPSASAFNVKSEPSSSYPPLVPGTSSDSSGFSHDISRMPDNPPRNRGHRRAHSEILTLPDDISFDSDLGVVGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSTFQMGEPSNAAMAASAGGPTSGAPTSSAENIVIGTNERPRVRHQHSQSMDGSTTIKPEMLVSGSEDMSAADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLNSENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKILTGQAMPPNGGPMMNFASFGGGQQFYPNNHAMHTLLAAQQFQQLQIHPQKQQQQQHQFQQQIQQQMQQQHQEQQHQQSGDMKMRAASPIPKDNASSDVNPSTAKDC. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08896 415 MobiDBLite consensus disorder prediction 356 415 - -
Seca4g08896 415 Coils Coil 234 303 - -
Seca4g08896 415 CDD bZIP_plant_RF2 219 268 IPR044759 GO:0003700|GO:0006355
Seca4g08896 415 FunFam probable transcription factor PosF21 217 270 - -
Seca4g08896 415 MobiDBLite consensus disorder prediction 356 390 - -
Seca4g08896 415 SMART brlzneu 214 278 IPR004827 GO:0003700|GO:0006355
Seca4g08896 415 SUPERFAMILY Leucine zipper domain 218 269 IPR046347 GO:0003700|GO:0006355
Seca4g08896 415 Gene3D - 217 270 - -
Seca4g08896 415 MobiDBLite consensus disorder prediction 401 415 - -
Seca4g08896 415 MobiDBLite consensus disorder prediction 1 75 - -
Seca4g08896 415 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 32 386 - -
Seca4g08896 415 MobiDBLite consensus disorder prediction 22 59 - -
Seca4g08896 415 Pfam bZIP transcription factor 218 276 IPR004827 GO:0003700|GO:0006355
Seca4g08896 415 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 216 279 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08896 Seca-Chr4 212180165 212184731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08896 20 347 bZIP Transcription Factor Family AT1G06070 75.455 5.87e-175 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca4g08896 bZIP_1 4.4e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08896 - - gmx:100786738 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03672 4 63481893 63484091 Seca4g08896 4 212180165 212184731 PCT