Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08882 ATGGACATTAGTCCTTACACTTCAAAGCTGAAAACAACACACTTTGGTCATGAAGTAGTAGCTGCCATAGACATGCACAGGAATAACCATCCCCAACACAGTCACACATCAACAAGCCGTTCCTCTGATTCAAGTGAGCCCTGTGATGATTCTTCTAAATGGGCCTCTAAACTTCTCAAAGAGTGTGCTATTGCAATATCACAAAGAGACTCCACAAGAATCCACCATCTTCTATGGATGTTAAATGAGCTTTCTTCCCCTTATGGTGACATGGATCAGAAACTAGCTTCTTACTTCTTGCAAGCTCTATTTTGCAAGGCTACAGAGTCAGGGCATAAGTGCTACAAGACTCTCTCTTCTGTTGCTGACAAAAACCACTCCTTTGATTCAGCTAGAAAGTTGATACTCAAGTTTCAAGAGGTTAGCCCTTGGACTACTTTTGGACATGTTGCTTCCAATGGTGCTATTTTGGAAGCCTTAGAAGGTGAGACTAAGCTTCACATAATTGATATTAGCAACACCCTTTGCACTCAATGGCCTACTCTGTTGGAAGCCCTGGCTACCAGAAATGATGACACTCCTCACTTGAAACTCACTGTTGTGGTTCTAACTTCCAGCTTAGTTGGGTCTGTGATGAAGGAAGTTGGGCAGAGGATGGAGAAGTTTGCAAGGCTAATGGGTGTGCCTTTTGAATTTAATGTGGTTTGTGGGTTGAGTCATCTCACTAAAGAAGGGCTTGGAGTTCAAGAAGATGAGGCAATTGCTGTGAATTGTGTTGGGGCATTGAGGAGAGTTGAGGTGGAAGAAAGGGATGATTTGATTCACATGTTCAAATCACTTGGTCCTAAAGTTGTGACTGTTGTTGAGGAAGAAGCTGATTTTTGTAGCTCAAGGGGTGATTTTGTGAAGTGCTTTGAAGAGTGCCTTAAGTTTTACACACTATACTTTGAGATGCTTGAGGAGAGTTTTCCACCAACAAGTAATGAGAGATTGATGTTGGAGAGGGAGTGTTCAAGAAGCATAGTTAGGGTTTTGGCTTGTGGTGGTGGTGGTGGTAATAATAATAGTAATGATGATGATGAAATTGAAGAGGAGGATGGTGATTATTGTGAGAGAAGGGAGAGAGGAACACAATGGTGTGAAAGGCTTAGGAGTGCATTTACCCCAATTGGATTCAGTGATGATGTTGTGGATGATGTCAAAGCATTGCTAAAGAGGTACCAAGCTGGGTGGTCACTTGTGGTGCCTCAAGGAGATGATCATCTCTCAGGAATTTACCTCACATGGAAGGAGGAACCAGTAGTTTGGGCTTCAGCATGGAAACCCTAG 1329 0.4281 MDISPYTSKLKTTHFGHEVVAAIDMHRNNHPQHSHTSTSRSSDSSEPCDDSSKWASKLLKECAIAISQRDSTRIHHLLWMLNELSSPYGDMDQKLASYFLQALFCKATESGHKCYKTLSSVADKNHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLEALATRNDDTPHLKLTVVVLTSSLVGSVMKEVGQRMEKFARLMGVPFEFNVVCGLSHLTKEGLGVQEDEAIAVNCVGALRRVEVEERDDLIHMFKSLGPKVVTVVEEEADFCSSRGDFVKCFEECLKFYTLYFEMLEESFPPTSNERLMLERECSRSIVRVLACGGGGGNNNSNDDDEIEEEDGDYCERRERGTQWCERLRSAFTPIGFSDDVVDDVKALLKRYQAGWSLVVPQGDDHLSGIYLTWKEEPVVWASAWKP. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08882 442 Pfam GRAS domain family 57 441 IPR005202 -
Seca4g08882 442 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 54 431 IPR005202 -
Seca4g08882 442 MobiDBLite consensus disorder prediction 32 48 - -
Seca4g08882 442 MobiDBLite consensus disorder prediction 29 48 - -
Seca4g08882 442 ProSiteProfiles GRAS family profile. 46 441 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08882 Seca-Chr4 211912910 211914238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08882 26 442 GRAS Transcription Factor Family AT4G37650 51.716 3.43e-144 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g08882 GRAS 9.9e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08882 - - gmx:100818806 670.618