Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08881 ATGAGGATAACGACGCGGACAACCTGGATTGCTTGTCACAACATCGACGCGACAATGGATGGGGATGATTCTATCTGCTTCTGGTCGCAGTTGATGGCGGTTTTAGAAAGGGGTTGCAATGAAAATTTAGCATTCGGAGATTGGGGATTTGTGGAGTTGGATCGCAAAAGGGACTTCACACTGTTCTGCATCGCCACTGGAGTTTGGGGATTTGTGGAATTGGATCGCAAAAGGGACTTCACACCGTTCTGCATCGCCACTAGTTCTACAATCTCATGTGTTTCAAACTTCTCCACAGGGCATAATCAACATGGATCCAAGGTTTTGGGGGGAATGAATATTGATACGATGGTTAGATTTTATGGGTTGAACGGAAAGCACAATGTGCTTTTTAAGTACAAGGGTGGGAATCATTTTGATATCTTAGTGGGCAATAGATATGGTATTGAAATTAAGTACCCTCAAAGGCAAAATGTTGATGTAGTTGTTATATCATCTGATGACGATGATAGTGATCCTGAAGAATACCCTTCTTGGACTGTTACCCTGGCAAGGGCTGCTGCATCTGGGACTAATGCTTTGACTATGCCCGCCAAATTTGTCAAAGGTGTCCTTTTGAAAAATCAGTGGTCTTTGATTTTAAATGATGAAAATGGAGAACAAATTGATTGTAAAATTTTGAAACCGAAAAGGAGATCAACTGAACGATATCTTGGCAGGGGTTGGTATAACTTTTGTCGCCAGAAAAAATTCAAGGAGGGGGACATTGTTACATTTTATTCAAAGTGGGATCCCACCAATTTATTTATTAAGATAGTTTGGTGA 825 0.4109 MRITTRTTWIACHNIDATMDGDDSICFWSQLMAVLERGCNENLAFGDWGFVELDRKRDFTLFCIATGVWGFVELDRKRDFTPFCIATSSTISCVSNFSTGHNQHGSKVLGGMNIDTMVRFYGLNGKHNVLFKYKGGNHFDILVGNRYGIEIKYPQRQNVDVVVISSDDDDSDPEEYPSWTVTLARAAASGTNALTMPAKFVKGVLLKNQWSLILNDENGEQIDCKILKPKRRSTERYLGRGWYNFCRQKKFKEGDIVTFYSKWDPTNLFIKIVW. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08881 274 SMART B3_2 180 273 IPR003340 GO:0003677
Seca4g08881 274 CDD B3_DNA 194 272 IPR003340 GO:0003677
Seca4g08881 274 SUPERFAMILY DNA-binding pseudobarrel domain 175 270 IPR015300 -
Seca4g08881 274 ProSiteProfiles B3 DNA-binding domain profile. 179 274 IPR003340 GO:0003677
Seca4g08881 274 Pfam B3 DNA binding domain 183 272 IPR003340 GO:0003677
Seca4g08881 274 Gene3D - 166 273 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08881 Seca-Chr4 211898553 211902811 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g08881 B3 1.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08881 - K09287 aprc:113861038 80.1073