Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08879 ATGTTTATTCAGAATGTTCATACTTTGTTATGGTGTTATGGTAGTTGCTACTTGCTACTAACCTGTGTGGTGTTTGGTGTTTTTTCTATGCAGCCGAAGCAAATTCATGAGATTAAGGACTTCCTTCTTACTGCTAGGAGGAAGGATGCACGCTCCGTGAAAATCAAGCGGAGCAGAGATGTGGTGAAGTTCAAGGTCCGTTGCTCCAAGTACCTCTACACCTTGTGTGTGTTTGACACTGAGAAGGCTGATAAGTTGAAGCAATCTCTTCCTCCTGGTTTGAGTGTGCAGGACCTGTGA 300 0.44 MFIQNVHTLLWCYGSCYLLLTCVVFGVFSMQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDTEKADKLKQSLPPGLSVQDL. 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08879 99 PANTHER 60S RIBOSOMAL PROTEIN L38 32 98 IPR002675 GO:0003735|GO:0005840|GO:0006412
Seca4g08879 99 FunFam 60S ribosomal protein L38 31 99 - -
Seca4g08879 99 Pfam Ribosomal L38e protein family 32 98 IPR002675 GO:0003735|GO:0005840|GO:0006412
Seca4g08879 99 Gene3D - 31 99 IPR038464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08879 Seca-Chr4 211872523 211874370 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08879 32 99 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 94.118 8.67e-43 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08879 K02923 - mnt:112094472 138.272