Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08873 ATGGACTACCCTTTTTCCCCTAAGGGAAGAGGAATTGGGTATTGGCAGTCTCCTAGAGCTCAGTTGGAGGGATCAACATCATTAGATGGTGGAATAGGTAATTCAATATCAGAGGATATGCCTAACAGCTTCTCTGAGCTCATGAACTTTGATACTTATCATGGTTTATGTACTAGTCCATCCATGAGTGATCAGATTTTGGCTAATGAGCTTCCATCATTTGCCTCAGTACCATATCCACCATCTGATGGATTCAACCTAGTTGAACAGAACAGTGGACAGTTCTTTGTGACAGGAGTTTACGGAAATTACAGCAATCTGGAAAGCTCCCCCGCTTATGGGGAGAAACTTGTGTGTCAGCAAATGGATACCCTACTTGGTTTATTAGATGACACAAATGATGCAAATAACTTAAATTCAAAGCAAAAAAATAATGGCTCTTTGCAACATATTAATACCTTTGATATTGGCGATAACATAATCTCCAGGCCACCTGGTTTGTCACTTGATGAGAGAATGTTGAGGGCTTTGTCCTTCTTTAAGGAATCTGCTGGTGGGGGAATATTGGCACAAGTTTGGGTGCCCTTAAAGCATGGTGGCCAAGTCATCTTAAGCACGAGTGAGCAACCATATTTACTAGATCAAATGCTTGCAGGGTATCGTGAAGTGTCAAGGACATATACATTTTCTGCAGAAGGAAAACCAGGTTGTTTCCCTGGACTTCCTGGTCGTGTGTTTATCTCCAAAGTTCCTGAGTGGACTTCCAATGTTGGTTACTACAGTAAGAGTGAGTACTTGAGGGCTGAGCATGCAAAAAATCACAAGGTTCGTGGATCAATCGCTTTTCCCATATTTGATCTGCACTCTGAACTGCCATGCTGTGCTGTATTGGAACTTGTCACAACAAAGGAAAAACCTGATTTTGACAAAGAATTGGAAATTGTTTGTCATGCACTCCAGCTCGTAAATTTAAGGACTACTATGCCTCTTCGACTTCTTCCCGAGTGTCTTTCAAACAATAAAAGAGCTGCTTTAATGGAAATAATTGATGTGTTACGATCTGTGTGTCATGCACATAGATTGCCGCTGGCACTGACATGGATTCCTTGTCATTACACTGAGGGCACAAGAGGTGAAGCTACAAGGATACAAATTATAGAGGGTCATTCAAGTTCTAGTGATAAAAACATACTGTGCATCGAAGAATCAGCTTGCTATATAACTGATAGAGTGATGGAAGGATTTGTTCGTGCATGCATTGAACATCATCTTGAAGAAGGGAAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCTTTCTTCTATCCTGATGTGAAGGAATATGATATTAGTGAATATCCACTTGTCCATCATGCACGCAAGTACAATTTGAATGCTGCAGTTGCAATTAGGCTAAGAAGTACTTATACTAATGATGATGATTACATATTGGAATTCTTTCTGCCTGTCAATATGAGAGGGAGTTCAGAACAGCAACTTCTATTAGACAATCTCTCTGGTACCATGCAGAGAATTTGTAGGAGTTTGAGGACAGTTTCGGATGCCGAATTATCAGGAATAGAAAGTTCACAAGTGGAGTTTGAAAAGAAAAATGCCCCCAGTTTTGTTCCTTTGTCTAGGGGAAACTCTCAAATACCATTAATAAATGGTAACCGTGATTCTGTCCAGAAGATGTCATTGAAGGCATCTAACCTAAGAAACAATGGAAGTGAGCCTTCACGTAACCAGGAAGGAAATGGATCAAAAAGGCAGGTTGAGAAAAATAGAAGTACATCAGAGAAGATTGTTAGCTTGAGTGTTCTTCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTGAAAAGGATATGCAGGCATCATGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCATTGAAGAAAATACAAACTGTCCTTGATTCTGTCCAGGGAGTGGAAGGTGCGTTGAAGTTTGATCCCTTGGTGGGAGCGTTTGTGGCAGGAGGGTCAATCATCCAAGAGATTGATGCACATAAAAGTCTTCTATTCCCTGAGAAAAGTACTGTAAAAGACCCTGGACCTATTACACAAGATGCAGTCTCAGTACCGCCTGCACCTTGTAGTGAAGGTGAGAACTCAGCAATTAAGTTGGAGAGAAAATTGAAGCAAACCAAGTCTTCTTCCATTGATGGTAGTGAAGATTCAAAATCAATGGCAATGGATGACGGGTCTTGCCAGCCAGCACAGGATTGTCTAGAACAACCTTGTTCGGACTCCGTTCTTGCAAAAGAAGTGGATAAATGTGTTCTGAGAAACAATTCAAGCTCCTTGATTGCTGATGGTATGGACATTTTTGAGGACAGGGATGATGAGGTTGTTGAACTTAACCACCCTACTTCTTCAAGCTTGACAGACTCATCTAATGGCTCTGGTTCAATGATGCATGATACCTCATCAGGTTCTCAGAGCTTTGAGAACCAGAAGCAGCCCAAAGACAAATCAACTATCGTTGATAGTGGGTCAAAAATTATTGTCAAAGTTACCTATGGAGAAGACACAGTTCGTTTCAAGTTTGATCCATGTGCAGGTTGTTTCAAGCTATATGAAGAAGTTGCAACAAGATTCAAACTACAAAATGGATCATTCCAGCTCAAGTATCTAGATGATGAAGAGGAATGGGTGATGTTGATGAATGACTCGGATTTGCAAGAGTGTATAGATATAATGGATGACATCGGCACGCGAAGTGTGAGGTTTCTTGTTCGTGATATGCCTTGTGTTTTTGGCAGCTCTGGCAGTAGCAGTAGCTACTTGGGAGGCAGCTCCTAG 2877 0.4108 MDYPFSPKGRGIGYWQSPRAQLEGSTSLDGGIGNSISEDMPNSFSELMNFDTYHGLCTSPSMSDQILANELPSFASVPYPPSDGFNLVEQNSGQFFVTGVYGNYSNLESSPAYGEKLVCQQMDTLLGLLDDTNDANNLNSKQKNNGSLQHINTFDIGDNIISRPPGLSLDERMLRALSFFKESAGGGILAQVWVPLKHGGQVILSTSEQPYLLDQMLAGYREVSRTYTFSAEGKPGCFPGLPGRVFISKVPEWTSNVGYYSKSEYLRAEHAKNHKVRGSIAFPIFDLHSELPCCAVLELVTTKEKPDFDKELEIVCHALQLVNLRTTMPLRLLPECLSNNKRAALMEIIDVLRSVCHAHRLPLALTWIPCHYTEGTRGEATRIQIIEGHSSSSDKNILCIEESACYITDRVMEGFVRACIEHHLEEGKGIAGKALQSNHPFFYPDVKEYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICRSLRTVSDAELSGIESSQVEFEKKNAPSFVPLSRGNSQIPLINGNRDSVQKMSLKASNLRNNGSEPSRNQEGNGSKRQVEKNRSTSEKIVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGALKFDPLVGAFVAGGSIIQEIDAHKSLLFPEKSTVKDPGPITQDAVSVPPAPCSEGENSAIKLERKLKQTKSSSIDGSEDSKSMAMDDGSCQPAQDCLEQPCSDSVLAKEVDKCVLRNNSSSLIADGMDIFEDRDDEVVELNHPTSSSLTDSSNGSGSMMHDTSSGSQSFENQKQPKDKSTIVDSGSKIIVKVTYGEDTVRFKFDPCAGCFKLYEEVATRFKLQNGSFQLKYLDDEEEWVMLMNDSDLQECIDIMDDIGTRSVRFLVRDMPCVFGSSGSSSSYLGGSS. 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08873 958 PANTHER PROTEIN NLP8 135 951 IPR045012 GO:0003700
Seca4g08873 958 MobiDBLite consensus disorder prediction 571 598 - -
Seca4g08873 958 ProSiteProfiles PB1 domain profile. 858 940 IPR000270 GO:0005515
Seca4g08873 958 MobiDBLite consensus disorder prediction 738 762 - -
Seca4g08873 958 SMART PB1_new 858 940 IPR000270 GO:0005515
Seca4g08873 958 SUPERFAMILY CAD & PB1 domains 849 942 - -
Seca4g08873 958 Pfam RWP-RK domain 604 651 IPR003035 -
Seca4g08873 958 Pfam PB1 domain 861 939 IPR000270 GO:0005515
Seca4g08873 958 MobiDBLite consensus disorder prediction 571 587 - -
Seca4g08873 958 Gene3D - 854 938 - -
Seca4g08873 958 ProSiteProfiles RWP-RK domain profile. 583 671 IPR003035 -
Seca4g08873 958 MobiDBLite consensus disorder prediction 813 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08873 Seca-Chr4 211717985 211725475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08873 1 955 NLP Transcription Factor Family AT2G43500 49.387 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca4g08873 PB1 4.9e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08873 - - gmx:100804426 1466.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03652 4 63108697 63114906 Seca4g08873 4 211717985 211725475 PCT