Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08863 ATGGAAGCGCGAGGTCGCTCCGTCGAAGAGATTTTTGAGGATTTCAGAGGCCGAAGAGCTGGCATCATCAAAGCCCTAACCAACGATGTTGAAGATTTCTACAACCAATGTGATCCCGAGAAGGAGAATTTGTGCTTATATGGATTACCTACTGAGCAGTGGGAAGTAAATTTACCTGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGTTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTGGCCTTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAAGGCTGACAGGAAACGACTATTCAATATGATTAATGAACTACCAACAATATTTGAAGTTGTTACTGGTACAGCAAAGAAACAAGTTAAAGAGAAGTCTTCAGTTTCAAACAACAGTGGCAGCAAATCTAAGTCCAGCTCTAAAGCGCGGGCTCCTGAAACTCAGGGTAGACAGTCAAAAGCATTACAATCAAAAGACGAGGATGAAGGGCTGGAAGAGCAGGATGACGAGGAACATGGAGACACCTTGTGTGGGGCATGTGGTGAGAATTATGGTACTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAGGTGGTTCCATGGCAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGCTAA 747 0.4458 MEARGRSVEEIFEDFRGRRAGIIKALTNDVEDFYNQCDPEKENLCLYGLPTEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLGLAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGTAKKQVKEKSSVSNNSGSKSKSSSKARAPETQGRQSKALQSKDEDEGLEEQDDEEHGDTLCGACGENYGTDEFWICCDICERWFHGKCVKITPARAEHIKQYKCPSCSNKRAR. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08863 248 FunFam PHD finger alfin-like protein 188 244 - -
Seca4g08863 248 CDD PHD_AL_plant 195 245 IPR044104 -
Seca4g08863 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 244 IPR013083 -
Seca4g08863 248 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Seca4g08863 248 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Seca4g08863 248 MobiDBLite consensus disorder prediction 141 171 - -
Seca4g08863 248 MobiDBLite consensus disorder prediction 141 192 - -
Seca4g08863 248 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Seca4g08863 248 SUPERFAMILY FYVE/PHD zinc finger 185 246 IPR011011 -
Seca4g08863 248 PANTHER CPG BINDING PROTEIN 6 248 IPR045104 GO:0006355|GO:0042393
Seca4g08863 248 SMART PHD_3 195 243 IPR001965 -
Seca4g08863 248 Pfam PHD-finger 196 245 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08863 Seca-Chr4 211480335 211484193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08863 6 248 Alfin-like Transcription Factor Family AT3G42790 72.840 1.13e-120 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Seca4g08863 Alfin 1.2e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08863 K26274 - gmx:100170700 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08863 4 211480335 211484193 Seca4g11703 4 257176575 257189461 ECH
Seca4g08863 4 211480335 211484193 Seca4g08863 4 211480335 211484193 ECH
Seca4g11703 4 257176575 257189461 Seca4g08863 4 211480335 211484193 PCT