Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08862 ATGAACTTGGGTGCGGCCGAGGAAGAATCGGCTGCAGCAGAGGTTCATGTACCAGCTGAAATTGATTGGCAAAAGCTTGATAAATCAAAGTTTTTCTTTCTTGGTGCAGCCCTTTTCTCTGGAGTTTCAGCAACTCTGTACCCAGTTGTTGTGTTGAAAACTCGTCAGCAAGTAGCTCTGTCTCAAGTTTCTTGCATCAAGACTGCATTTTCAATGATCAGGCTTGAGGGTTACCAAGCATTGTATAGAGGATTTGGGACTTCTTTGATGGGTACAATCCCTGCTAGAGCCTTATATATGGCTGCCCTTGAAATTACCAAAAGTAATGTAGGTACTGCTACTCTTAGGTTTGGGTTACCTGAACCAACTGCTGCTACAATTGCCAATGCAATTGGAGGGTTGAGTGCAGCCATGGCAGCTCAAATTGTGTGGACCCCAGTTGATGTTGTAAGCCAAAGGTTGATGGTTCAAGGTAGTTCTAGTTCGCAATATATCAATGGGATTGATGCCTTCAGAAAAATTCTCAACACAGATGGTCCAAGAGGGTTGTATAGGGGTTTTGGGATATCAATTTTGACTTATGCACCTTCAAATGCAGTTTGGTGGGGTTCCTATTCTGTGGCACAAAGGTTGGTTTGGGGTGGAATTGGATACTACTTGTGTAAGAAAAATGATGATGATGAGAGGAGTATTGAATTGAGGCCAGATTCAAAAACAGTGATGGCAGTTCAAGGAGTGAGTGCAGCAATGGCAGGTGGCATGTCTGCTTTAATTACCATGCCATTGGATACAATCAAGACTAGATTGCAGGTCTTGGATGGTGATGAGAATGGTCGTCGTGGACCAACAGTTATGCATACAGTGAGAAATTTGGTTAAAGAAGGTGGTTGGATGGCATGTTACAGAGGTTTGGGACCTAGGTGGGCTTCAATGTCAATGTCTGCAACAACAATGATCACTACTTATGAGTTACTAAAACGACTTTCTACTAAAACTCAAGAGGTTTTGACTTGA 1014 0.428 MNLGAAEEESAAAEVHVPAEIDWQKLDKSKFFFLGAALFSGVSATLYPVVVLKTRQQVALSQVSCIKTAFSMIRLEGYQALYRGFGTSLMGTIPARALYMAALEITKSNVGTATLRFGLPEPTAATIANAIGGLSAAMAAQIVWTPVDVVSQRLMVQGSSSSQYINGIDAFRKILNTDGPRGLYRGFGISILTYAPSNAVWWGSYSVAQRLVWGGIGYYLCKKNDDDERSIELRPDSKTVMAVQGVSAAMAGGMSALITMPLDTIKTRLQVLDGDENGRRGPTVMHTVRNLVKEGGWMACYRGLGPRWASMSMSATTMITTYELLKRLSTKTQEVLT. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08862 337 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 211 IPR018108 -
Seca4g08862 337 PRINTS Mitochondrial carrier protein signature 184 202 IPR002067 GO:0055085
Seca4g08862 337 PRINTS Mitochondrial carrier protein signature 32 45 IPR002067 GO:0055085
Seca4g08862 337 PRINTS Mitochondrial carrier protein signature 84 104 IPR002067 GO:0055085
Seca4g08862 337 PRINTS Mitochondrial carrier protein signature 248 270 IPR002067 GO:0055085
Seca4g08862 337 Gene3D Mitochondrial carrier domain 30 335 IPR023395 -
Seca4g08862 337 SUPERFAMILY Mitochondrial carrier 24 325 IPR023395 -
Seca4g08862 337 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 11 334 - -
Seca4g08862 337 Pfam Mitochondrial carrier protein 38 109 IPR018108 -
Seca4g08862 337 Pfam Mitochondrial carrier protein 126 212 IPR018108 -
Seca4g08862 337 Pfam Mitochondrial carrier protein 242 331 IPR018108 -
Seca4g08862 337 ProSiteProfiles Solute carrier (Solcar) repeat profile. 27 109 IPR018108 -
Seca4g08862 337 ProSiteProfiles Solute carrier (Solcar) repeat profile. 239 328 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08862 Seca-Chr4 211466282 211467295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08862 1 334 Chloroplast and Mitochondria Gene Families AT1G72820 73.837 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08862 K15121 - zju:107403560 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08862 4 211466282 211467295 Seca4g08862 4 211466282 211467295 ECH