Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08857 ATGGCTGAAGAAGGGTCCACCGTAATTGCCATTGATAAAGACAAGTACAGCAAATACGCTGTAAAGTGGGCTGTGGATAACCTTTTGAAGAAAAACTCTTCCTGCACTCTCATTCACGTCAGAACCAAGGCCTTGAATCCCCATGAGTTTGATGCTATCTGTAAACAAGGTCGTCCACCAACTGAAGAAGAATTGCACCATCTTTTTCTTCCCTTCAGAGGGTTTTGTGCTCGGAAAGGGATTGTAGCAAAGGAGTTGGTCCTGCATGACATTGATGTTCCAAGTGCACTTATTGATTACATTATTAACAACTCTATCAGCAATATTGTTGTTGGTGCTAGCCGCTGGAATGCTCTTATAAGGAAATTTAAAGACGATGTGCCAACAAGCTTAGTGAGGTCTGTGCCAGTGTCATGCATGGTGCATATTATATCCAAAGGAAAAGTGCAGAATATTCGACCAGCAGGTCGTTCTCAAATCATGCCAACAAAATCTTTAAAAGACAGTTATAGTCCCAAGGGATTCGAAGAAGTAAACAGAAAATCATTCAAACATGGAATTGGACAGTTTACTGATTATGTGTTGTTGGCATTTGATGTTTATTTGTACAGCAAATCATTCAAATATGGAAATGACATAGAGAATGCTTCGCCAAGTTTATCTAATGAAAGTCACTCCTCACAAAATTCATCAAATCGAAGTTCCCTCACGCGTAACACTTCAAGCCCGCTTGGTTCTCAATTCACCGAGGCATCGCATGACATGTCAATCACTCATAGGAGCAAATCTTTAAAACATTCCCCTAAAAGTGTGGAGATAGAAATAAGAAAATTAACAGTAGAACAGAAGAGAACAACACAGAAGTCTAATAGCTGCAGGGAAGGTGCTGCAGCAAAACAGAAGGAACTTGAAAGGATTAGGCAAGAAGAACGGAACATGGAAAAAGCTAGGCTTGCTGAAGAGGAAACCAATACCATTGAGGAAGAAATGAAGACTCGGAAGAAAAGGCAAATTGAAATAAGAGCCTTACATGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGAAGAGAGCATCAAATGCAAGTGCACATAACAACATTCAATTTATAAGATACAACATTAAAGAAATTGAAGTTGCAACAAATTACTTTGACAATGTTCTCAAAATTGGTGAAGGTGGATATGGACCTGTTTTCAAAGGGGTGCTTGATCACACTATTGTTGCTGTTAAGGCCTTGAGACCAGACATAACCCAAGGGGAGAAGCAATTTCAACAAGAGGTTCAAGTTTTGAGCACCATAAGACATCCAAACTTGGTTCTACTTATAGGTGCATGTCCAGAGTTTGGATGCCTTGTGTATGAGTACCTAGAAAATGGCAGCTTAGAAGATCGCCTTTTCCTAAAAGACAATACCCCACCAATTCCATGGAAGATTCGATTCAGAATAGCATCAGATATTGCCACTGGCCTTCTTTACCTTCACCAGACAAAACCTGAGCCAGTTGTACATCGTGACCTCAAGCCAGCAAACATTCTCTTGGACAGGAACTATGTAAGCAAGATCACTGATGCAGGTTTAGCCAGACTTGTTCCTCCTTCAGTAGCCAACAAAACCACTGAATACTACAAAACAGCAGCAGCTGGCACATTTTGCTACATTGATCCAGAGTATCAACAAACAGGACTATTGGGCGTGAAATCAGACATATATTCATTAGGTGTAATGTTGCTACAGATTATTACTGGAAAGCCTCCTATAGGTGTGGCACGCTTGGTTGAGGAGGCTATACACAAAGGTAAATTTGCAGAGGTGCTTGATCCAAATGTGACAGATTGGCCTGTTGAAGATACTCTATCTTATGCTAGGTTGGCTTTGAAGTGTTGTGAGATGAGAAAAAGGGACAGACCAGATCTTGGTTCTGTCATTTTGCCTGAGCTGAATCGACTCCGAGATCTGTGA 1959 0.4074 MAEEGSTVIAIDKDKYSKYAVKWAVDNLLKKNSSCTLIHVRTKALNPHEFDAICKQGRPPTEEELHHLFLPFRGFCARKGIVAKELVLHDIDVPSALIDYIINNSISNIVVGASRWNALIRKFKDDVPTSLVRSVPVSCMVHIISKGKVQNIRPAGRSQIMPTKSLKDSYSPKGFEEVNRKSFKHGIGQFTDYVLLAFDVYLYSKSFKYGNDIENASPSLSNESHSSQNSSNRSSLTRNTSSPLGSQFTEASHDMSITHRSKSLKHSPKSVEIEIRKLTVEQKRTTQKSNSCREGAAAKQKELERIRQEERNMEKARLAEEETNTIEEEMKTRKKRQIEIRALHEEEEEEEEERKRASNASAHNNIQFIRYNIKEIEVATNYFDNVLKIGEGGYGPVFKGVLDHTIVAVKALRPDITQGEKQFQQEVQVLSTIRHPNLVLLIGACPEFGCLVYEYLENGSLEDRLFLKDNTPPIPWKIRFRIASDIATGLLYLHQTKPEPVVHRDLKPANILLDRNYVSKITDAGLARLVPPSVANKTTEYYKTAAAGTFCYIDPEYQQTGLLGVKSDIYSLGVMLLQIITGKPPIGVARLVEEAIHKGKFAEVLDPNVTDWPVEDTLSYARLALKCCEMRKRDRPDLGSVILPELNRLRDL. 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08857 652 MobiDBLite consensus disorder prediction 218 303 - -
Seca4g08857 652 Gene3D Transferase(Phosphotransferase) domain 1 456 651 - -
Seca4g08857 652 SUPERFAMILY Protein kinase-like (PK-like) 364 641 IPR011009 -
Seca4g08857 652 ProSiteProfiles Protein kinase domain profile. 383 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08857 652 FunFam Os07g0541700 protein 456 547 - -
Seca4g08857 652 CDD STK_N 6 147 - -
Seca4g08857 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672|GO:0006468
Seca4g08857 652 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 355 455 - -
Seca4g08857 652 Gene3D HUPs 6 141 IPR014729 -
Seca4g08857 652 Pfam Universal stress protein family 8 141 IPR006016 -
Seca4g08857 652 Coils Coil 333 363 - -
Seca4g08857 652 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 141 - -
Seca4g08857 652 Pfam Protein kinase domain 386 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08857 652 MobiDBLite consensus disorder prediction 218 254 - -
Seca4g08857 652 CDD STKc_IRAK 389 649 - -
Seca4g08857 652 PANTHER OS02G0152300 PROTEIN 8 651 - -
Seca4g08857 652 MobiDBLite consensus disorder prediction 255 283 - -
Seca4g08857 652 SMART serkin_6 383 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08857 652 Coils Coil 296 323 - -
Seca4g08857 652 Gene3D Phosphorylase Kinase; domain 1 359 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08857 Seca-Chr4 211359609 211364754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08857 7 652 Receptor kinase-like Gene Family AT1G17540 47.214 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca4g08857 Pkinase 8.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08857 - - gmx:100814365 801.586