Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08852 ATGGCCAAGAGTGTGTTACTGACACACTTGGAAATGGAGTTTGAATCCAAGGTAGCGGCCTATGAATTTTACAATGAGTACAGTAAGAGAGTTGGGTTTGGTATTCGTCGAGAATATGGAAATAAAAGCAAAAAAGATGGAATTTTGACTTCAAGAAGATTCTCATGCTTCAAAGAGGGTAAACGAGGCATTGACAAACGAGACCACTTGACGAAAAAGCCTAGAACAGAAACCAGAACAGGATGTCAAGCCCGTATGGTTATTTCACTTGATCGGAAGATAAGGAAATACAAGGTTATTGACTTTATAGCTCAACATAATCACCCTCTTCAATCAACAAAATATGCTTATATGATTCGTTCTCATCACCACATTTCTGATTCACAAACATCACACATTGTATTGGCAGATGCATCTGGATTAAAACCAAAAGATTTTCATGAATATGTGTCCATGCAATCTGGTGGAATTGACAGTGTTGGTTACACAAGACAAGACCATAAAGAATTACCTTCGAACTAA 522 0.3755 MAKSVLLTHLEMEFESKVAAYEFYNEYSKRVGFGIRREYGNKSKKDGILTSRRFSCFKEGKRGIDKRDHLTKKPRTETRTGCQARMVISLDRKIRKYKVIDFIAQHNHPLQSTKYAYMIRSHHHISDSQTSHIVLADASGLKPKDFHEYVSMQSGGIDSVGYTRQDHKELPSN. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08852 173 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 11 157 - -
Seca4g08852 173 ProSiteProfiles WRKY domain profile. 37 111 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g08852 173 Pfam FAR1 DNA-binding domain 22 111 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08852 Seca-Chr4 211270664 211271185 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g08852 FAR1 3.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08852 - - tpra:123896263 251.906