Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08848 ATGGGAAATCAGAAGCAGAAATGGACGGCAGAGGAAGAAGACGCGTTGCACCGCGGCGTCCAGAAGCACGGTGCCGGAAAGTGGAAGAACATTCTCAAAGATCCCGAGTTCGCTCCTGCCCTCGCTAGTCGTTCCAACATCGACCTCAAGGATAAATGGCGAAATTTAAGTGTTGGCAGTGGTCAAGGCTCTAAAGATAAATCTAGGACTCCCAAGATTAAAGCAATAGTTCCTGTTGCTTCTCCAATTGCTACTACACAAAATGCTGCTACTGCTGCTGCTCCAGTTGCCACTCCGCAAAGTGCTACTCCTCAAACTCAACCTCAACATCCTTCTAATAATTCTGACGATGCCAAAATTCCTCCGCGGTACAATGCAATGATCTTTGAAGCTTTATCAGCAATCAAGGATACTAATGGTTCTGACATAAATGCCATTGTTAGATTCATCGAGCAAAAGCACCAAGTTCCTCAAAATTTCCGAAGAGCATTAGGTTCGAGGTTGAGGAGGCTTGTTAATCAAGGGAAACTTGAAAAGGTACAAAATTGTTTCAAGATAAAAAAGGACACTCCAATGGCAACGAAGTCACCTGCACCAGTAAAAAAGGAAACCCCGTTGGGGGCAAAGTTATCTACACAAAAACCACCTGCCCCAAAACCAAAGGATGTCTGTCCACGGCAATCACCAGCCTCTAGTATTTTGACATCTAATGAGACAATAAAGGATGCTGCTGATGCTGCAGCATACAGAGTTGCTGATGCAGAGAACAAATCATTTTTGGCCGCTGAGGCAGTCAAGGAGGTGGATAGAATCTCAAAGCTGGCTGAAGATACTGATTCAATGTTACAGCTTGCGAAAGAGATTTATGAACAATGTACTGCAGATAAGCAACCTTATCTACTCATTAGTAAATTTTTTAACCATAATTTAGTAAGTTAA 939 0.4313 MGNQKQKWTAEEEDALHRGVQKHGAGKWKNILKDPEFAPALASRSNIDLKDKWRNLSVGSGQGSKDKSRTPKIKAIVPVASPIATTQNAATAAAPVATPQSATPQTQPQHPSNNSDDAKIPPRYNAMIFEALSAIKDTNGSDINAIVRFIEQKHQVPQNFRRALGSRLRRLVNQGKLEKVQNCFKIKKDTPMATKSPAPVKKETPLGAKLSTQKPPAPKPKDVCPRQSPASSILTSNETIKDAADAAAYRVADAENKSFLAAEAVKEVDRISKLAEDTDSMLQLAKEIYEQCTADKQPYLLISKFFNHNLVS. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08848 312 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Seca4g08848 312 SMART h15plus2 117 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca4g08848 312 MobiDBLite consensus disorder prediction 90 119 - -
Seca4g08848 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Seca4g08848 312 MobiDBLite consensus disorder prediction 43 73 - -
Seca4g08848 312 PANTHER SINGLE MYB HISTONE 4 1 293 IPR044597 GO:0003691
Seca4g08848 312 FunFam Telomere repeat-binding factor 1 8 87 - -
Seca4g08848 312 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca4g08848 312 SMART sant 4 59 IPR001005 -
Seca4g08848 312 MobiDBLite consensus disorder prediction 90 121 - -
Seca4g08848 312 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Seca4g08848 312 MobiDBLite consensus disorder prediction 7 21 - -
Seca4g08848 312 Gene3D - 2 58 - -
Seca4g08848 312 Gene3D - 118 199 IPR036388 -
Seca4g08848 312 Pfam linker histone H1 and H5 family 122 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca4g08848 312 SUPERFAMILY "Winged helix" DNA-binding domain 121 199 IPR036390 -
Seca4g08848 312 MobiDBLite consensus disorder prediction 1 28 - -
Seca4g08848 312 FunFam Telomere repeat-binding factor 1 2 58 - -
Seca4g08848 312 MobiDBLite consensus disorder prediction 190 230 - -
Seca4g08848 312 CDD SANT_TRF 6 56 - -
Seca4g08848 312 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08848 Seca-Chr4 211092436 211097910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08848 1 300 Single Myb Histone (SMH) Gene Family AT1G17520 48.039 3.82e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g08848 Linker_histone 6.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08848 K09422 - cave:132188743 342.043