Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08845 ATGGAACCTCGGATTGGGAACAAGTTCCGTCTTGGTCGCAAGATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGGTACAAATATTCAGACAAATGAAGAGGTTGCAATTAAACTCGTGAGTACTATGACTTACTCTAATTTAGAATTTGTTGATCTTTACTTTCCCTGTTTGCAAATCCAAAACACAATTTGCATGAATAGCAAGAGGTGCCAAAAGGAGTGCCTGAGACTGTCCCTTACTCCCTTGTGCCTTGGTTCCACAACTCCAAAGCGGGTGTTTGGCCATGTATCCACTGCGGCTTATCCTTTGTCATTAATGGCATTGATGATAGTTGACTTATTGAAGAACTGTGTTGTCTCTGGGATTCCAAATGTGAGATGGTTTGGCGTTGAAGGAGAATACAATGTCCTCGTGATGGATTTACTTGGCCCTAGTCTTGAGGATTTATTCAATTTCTGTAGTCGGAAATTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAACCGAGTTGAATTTATTCATTCCAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTCATGGGTTTGGGGAGGCGTGCAAATCAAGTTTATGCCATTGACTTCGGTCTTGCTAAGAAATACAGAGACACCTCTACCCATCAGCATATTCCTTACAGAGAGAATAAGAATTTGACTGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATAGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATATGTTCTTATGTATTTTTTGAGAGGAAGTCTTCCGTGGCAGGGATTGAAAGCGGGTACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTGTGTCGTGGCTACCCCTCAGAATTTGCTTCATACTTCCATTACTGTCGGTCACTGCGGTTTGATGATAGACCAGATTATGCTTATTTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCCACTCCTCCTGCACGTGCCATTGGTCCTGCTGCTGGACCAAGTTCTGGCATGCCGCCAGCTATTGTCAATGCTGATAGGCAGACAGGTGGGGAGGACGGTAGGCATACTGGTTGGTCTTCATCAGATCCTACTCGTAGAAGAAACTCTGGACCTATTGCTAATGATGGAATCTTATCTAGACAAAAAGCCCCAGTTCCAAGTGACTCAGCTGGATCTAAAGATGTTATGTTGTCTAGTTCTAATTTCTTCCGGCCAAGTGGGTCTACAAGGCGAGGTGCTGTTTCCAATAGTCGTGATGCAGTTGTTAGCAGTGAGACTGAGCCTTCTAACCCTCTTGTCACTGATGCTAGTTCAGGAGCACTCCGTAAAATCTCTGGTGCTCAAAGAAGTTCAGCTATCACATCATCCGAGCACATCAGAACATCGTCTAGCAGAAACACATCAAACATGAAGAATTATGAGTCAACTCTCCGAGGTATTGAGAGCCTGAATTTCAATGACGAGAGGGTACAGTATTAG 1596 0.4286 MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLVSTMTYSNLEFVDLYFPCLQIQNTICMNSKRCQKECLRLSLTPLCLGSTTPKRVFGHVSTAAYPLSLMALMIVDLLKNCVVSGIPNVRWFGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDRPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPPARAIGPAAGPSSGMPPAIVNADRQTGGEDGRHTGWSSSDPTRRRNSGPIANDGILSRQKAPVPSDSAGSKDVMLSSSNFFRPSGSTRRGAVSNSRDAVVSSETEPSNPLVTDASSGALRKISGAQRSSAITSSEHIRTSSSRNTSNMKNYESTLRGIESLNFNDERVQY. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08845 531 MobiDBLite consensus disorder prediction 363 510 - -
Seca4g08845 531 Gene3D Transferase(Phosphotransferase) domain 1 100 366 - -
Seca4g08845 531 CDD STKc_CK1_delta_epsilon 8 340 - -
Seca4g08845 531 FunFam CK1 family protein kinase 98 367 - -
Seca4g08845 531 Pfam Protein kinase domain 132 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08845 531 Gene3D Phosphorylase Kinase; domain 1 1 50 - -
Seca4g08845 531 MobiDBLite consensus disorder prediction 431 510 - -
Seca4g08845 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Seca4g08845 531 SUPERFAMILY Protein kinase-like (PK-like) 5 348 IPR011009 -
Seca4g08845 531 PANTHER CASEIN KINASE-RELATED 13 465 - -
Seca4g08845 531 MobiDBLite consensus disorder prediction 392 407 - -
Seca4g08845 531 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Seca4g08845 531 SMART serkin_6 9 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08845 531 ProSiteProfiles Protein kinase domain profile. 9 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08845 Seca-Chr4 211062818 211068163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08845 158 340 MAP Kinase Kinase Kinase AT1G62400 27.568 6.33e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Seca4g08845 Pkinase 5.9e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08845 K02218 - gmx:100778165 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11741 4 257748415 257753506 Seca4g08845 4 211062818 211068163 PCT