Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08843 ATGCCACGGGGTAGGATCAGGGCAAAGCTCCGCAGGAGCCATCTTTACACTTTTGGTTGCCTTAGGCCAACTACTTCTGAGGAGGTTCCTCATCCACTTCAAGGTCCTGGCTACTCGAGAACTGTATATTGCAACCAGCCTCTGCTCCATGAAAAGAAATCTCTATTTTACTGCAAGAATGATATATCAACGACCAAGTACAATGTTATCTCGTTTTTGCCTAAGGCACTGTTTGAACAATTTCGGAGGGTTGCTAATATATACTTCCTTTTGGCTGCTTGTCTCTCGGCCTCTCCAATTTCACCTTTCAGCCCAGTGAGCATGATTGCTCCTTTGGTGTTTGTTGTGGGGCTTAGTATGGCAAAGGAAGCATTGGAGGATTCACGCAGGTTCCTTCAGGATGTCAAAGTTAATCGCCGGAAAGCTGGTCTCCATAAAGGCAATGGCGTTTTTGGTCCCAGGTCCTGGCAGAAAATTATGGTTGGGGATGTGGTAAAAGTAGAAAAGGACCAATTTTTTCCATCTGACCTGCTCCTCTTAGCATCAAGTTATGAGGATGGGATATGCTATGTGGAGACCATGAATTTAGATGGTGAAACCAACTTGAAGGTGAAGAGATCTTTGGAGGCTACCTTGTCTCTTGATAATGATGGAGCTTTTAAGGATTTCTCAGGAACAATACGTTGTGAAGACCCAAATCCCAATCTTTACACTTTTGTTGGGAACTTTGAGTATGAACGTCAGGTTTATCCTCTTGATCCTAATCAAATTCTTCTTCGAGATTCAAAGCTTAGGAACACTGATTATGTCTATGGGGTGGTCATTTTCACTGGTCACGACAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGGAGCACAATAGAAAAAAAGATGGATTATATCATATACACTCTTTTCACTGTCCTTATATTGATATCCTTTATTAGTTCAATAGGATTTGTTGCTAAGACCAAGTACCAAACCACAAAGTGGTGGTATTTACGGCCTGACAATATTGAATACCAGTATGATCCTGGGAAAATTGGGTTGGCTGGGATGAGCCATCTGATCACTGCACTTATTCTTTATGGATATTTGATACCCATCTCACTTTATGTTTCAATTGAGGTTGTGAAGGTATTGCAAGCAACCTTCATTAACCAAGACATTCAAATGTATGATGAAGAAACTGGGACTCCAGCTGAAGCACGGACATCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACTATCCTCTCTGATAAAACTGGAACTTTAACCTGCAATCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTACCTATGGTGTACGTTCCAGTGAAGTTGAACTTGCTGCAGCAGAGCAGATGGCTTCTGATCTTGAGGAGAAGGACTTGGATCTCTCTAATTTCCCCATGCCTAAGAGTAAAGTGCGAGGGGAAAATGTTAGAAAAGACGAAGAAATTGAACTTGAGACTGTTGTTGCTTCCAAGGGTGATGAGCATCGAAGGCCTGCCATAAAGGGATTTGGTTTTGAAGACAACCGGCTCATGAATTGTAACTGGTTGAAAGATCCCAAGGCTGATGTTCATTTGATGTTTTTCCGGATATTAGCAGTTTGCCATACTGCCATTCCTGAGCTGAATGAGGAGACTGACAGTTGTACATATGAAGCTGAGTCACCTGATGAAGGAGCTTTTCTTGTAGCAGCTAGAGAATTTGGTTTTGAATTTTATAGAAGAACTCAATCAAGTGTTGTCGTACGTGAAAAATTTTCTGCTTCTGGACAAGTGGTTGAAAGAGAGTATAAAATCTTGAATCTTCTGGATTTTACAAGCAAAAGAAAGCGTATGTCAGTGATTGTTCGTGATGAAGAGGGAAACATTATTCTTTTGTGCAAAGGAGCTGACAGTATCATATTTGATCGATTATCCAAGAATGGAAAAATGTATTTGGAGGCCACTACTAGACATTTGAATGAATATGGAGAAGTTGGCTTGAGAACACTAGCCCTGGCTTACAGAAAGCTTAATGACCAAGAGTATTCTGATTGGAATAACGAGTTTCAGAAAGCCAAGACAGCTGTTGGGCCTGATAGAGAGGCAATGCTTGAGAATGTATCAGATATTATGGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCTGTGGAAGACAAACTGCAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTGTTGACAGGGGATAAGATGGAAACTGCAATCAACATTGGATTCTCTTGTAGTTTGCTTCGACAGGGCATGAAGCAAATCTGTATCACTATGAATTCAGATTCAATAACCAATGATGGGAAAGAGGTCATTAAAGGCAACATCTTGAATCAAATCACCAATGCCTCACAAATGATAAAGCTGGAGAAGGATCCACATGCTGCGTATGCATTAATTATTGATGGGAAAACTCTAACATATGCTTTAGAAGATGATATGAAGCATCAATTTTTGGGATTGGCTGTTGATTGTGCATCTGTCATTTGCTGTCGTGTCTCTCCCAAACAAAAAGCCTTGGTAACAAGGTTAGTGAAACAAGGAACTGGGAAGACTACTTTAGCAATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCTGACATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTGATGGCTAGTGACTTTTCCATTGCCCAATTTCGGTTTTTGGAGCGGCTTCTAGTAGTCCACGGACACTGGTGTTACAAGAGAATTGCACAAATGATATGTTATTTCTTCTACAAAAATATAGCATTTGGCCTCACCATATTCTATTTTGAGGCATTTGCGGGCTTCTCTGGTCAATCGGTTTATGATGACTGGTACATGATATTGTTCAATGTTGTTCTTACATCCTTGCCTGTCATTTCACTTGGAGTTTTTGAACAAGATGTTCCATCAGAAGTTTGCTTACAGTTTCCTGCACTGTATCAGCAAGGACCCAAAAATTTGTTCTTTGACTGGTATAGAATATTGGGATGGATGGGGAATGGTCTCTATTCCTCCCTCATCATCTTCTTCCTTGTCATCATCATCTTCTATGACCAAGCATTTCGTGCAAATGGCCAGACTGCAGACATGGCTGCTGTTGGTACCACGATGTTCACTTGCATCATCTGGGCTGTTAATTGCCAGATTGCACTGACAATGAGCCATTTTACATGGATTCAGCACCTCTTTGTGTGGGGTAGCATAGCCACTTGGTACCTCTTTCTCTTGTTATATGGCATGCTTTCTCCACAATACTCTAGGACAGCGTACCAAATATTGGTTGAAGTTCTTGCTCCTGCTCCTATTTATTGGATAGCAACCCTTTTAGTAACAATTACATGCACCTTTCCTTATCTCGCCCATATATCCTTCCAAAGATGTTTTAATCCCTTGGATCATCACATTATCCAAGAAATCAAGTACTACAAGAAGGACATTGAAGACCAACACATGTGGACGAGGGAGCGGTCTAAAGCAAGACAGGAAACGAAGATTGGATTCACAGCACGAGTGGAAGCAAAGATCAGGCAGTTGAAAGGGAAGCTTCAGAAGAAGCAATCTTCAATGGAGGCTTTGTCCCTATCATGA 3666 0.4141 MPRGRIRAKLRRSHLYTFGCLRPTTSEEVPHPLQGPGYSRTVYCNQPLLHEKKSLFYCKNDISTTKYNVISFLPKALFEQFRRVANIYFLLAACLSASPISPFSPVSMIAPLVFVVGLSMAKEALEDSRRFLQDVKVNRRKAGLHKGNGVFGPRSWQKIMVGDVVKVEKDQFFPSDLLLLASSYEDGICYVETMNLDGETNLKVKRSLEATLSLDNDGAFKDFSGTIRCEDPNPNLYTFVGNFEYERQVYPLDPNQILLRDSKLRNTDYVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFVAKTKYQTTKWWYLRPDNIEYQYDPGKIGLAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDEETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTTYGVRSSEVELAAAEQMASDLEEKDLDLSNFPMPKSKVRGENVRKDEEIELETVVASKGDEHRRPAIKGFGFEDNRLMNCNWLKDPKADVHLMFFRILAVCHTAIPELNEETDSCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVVVREKFSASGQVVEREYKILNLLDFTSKRKRMSVIVRDEEGNIILLCKGADSIIFDRLSKNGKMYLEATTRHLNEYGEVGLRTLALAYRKLNDQEYSDWNNEFQKAKTAVGPDREAMLENVSDIMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFSCSLLRQGMKQICITMNSDSITNDGKEVIKGNILNQITNASQMIKLEKDPHAAYALIIDGKTLTYALEDDMKHQFLGLAVDCASVICCRVSPKQKALVTRLVKQGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLIIFFLVIIIFYDQAFRANGQTADMAAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSIATWYLFLLLYGMLSPQYSRTAYQILVEVLAPAPIYWIATLLVTITCTFPYLAHISFQRCFNPLDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRQLKGKLQKKQSSMEALSLS. 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08843 1221 Gene3D - 432 454 IPR023299 GO:0000166
Seca4g08843 1221 FunFam Phospholipid-transporting ATPase 722 918 - -
Seca4g08843 1221 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Seca4g08843 1221 Gene3D - 115 288 - -
Seca4g08843 1221 Pfam Cation transport ATPase (P-type) 544 649 - -
Seca4g08843 1221 CDD P-type_ATPase_APLT_Dnf-like 60 1031 - -
Seca4g08843 1221 SUPERFAMILY Calcium ATPase, transduction domain A 148 286 IPR008250 -
Seca4g08843 1221 Pfam Phospholipid-translocating P-type ATPase C-terminal 906 1156 IPR032630 -
Seca4g08843 1221 Gene3D - 585 697 IPR023299 GO:0000166
Seca4g08843 1221 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Seca4g08843 1221 PRINTS P-type cation-transporting ATPase superfamily signature 878 897 - -
Seca4g08843 1221 FunFam Phospholipid-transporting ATPase 118 288 - -
Seca4g08843 1221 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Seca4g08843 1221 NCBIfam phospholipid-translocating P-type ATPase 57 1164 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca4g08843 1221 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1152 IPR023298 -
Seca4g08843 1221 FunFam Phospholipid-transporting ATPase 589 720 - -
Seca4g08843 1221 SUPERFAMILY HAD-like 410 922 IPR036412 -
Seca4g08843 1221 SFLD Haloacid Dehalogenase 404 929 - -
Seca4g08843 1221 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 521 684 IPR023299 GO:0000166
Seca4g08843 1221 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 36 1182 - -
Seca4g08843 1221 NCBIfam HAD-IC family P-type ATPase 850 959 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g08843 1221 Coils Coil 448 468 - -
Seca4g08843 1221 SFLD p-type atpase 404 929 IPR044492 -
Seca4g08843 1221 Gene3D - 419 431 IPR023214 -
Seca4g08843 1221 Gene3D - 718 918 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08843 Seca-Chr4 211051138 211057624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08843 1 1219 Primary Pumps ATPases AT1G17500 75.839 0.0 1939
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08843 K01530 - gmx:100778710 2227.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11742 4 257753770 257761349 Seca4g08843 4 211051138 211057624 PCT