Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08838 ATGAGAGACAGTCCCATTGTTGAGTCAACCAAGATCAGCAATGGGGATGTCCTGATTGATGAGGCACAAAGCATGACACATGAAGATGAGATGTTAGACGTGGAACACGTTTTAAGATTTGAAAATGGGATAGATGAAGTACAGGAGTCTCTATTGCCATCATGCTTTCAGGAATTTCTTCTGTGGCCTCCTGATGATTGTGTCACCTTAGAGTGGGTTCAGGACATGATGTTCATCCTTGAGCAGGCTTCACGGAAGATGTTGCCATCTGAACTCTGCCATGTTGTGCCAACCATTTTGGTAGACAAATTGACAGATACTGCTTGCAGTATTTTATGTAAAGAACCAAACTGTGTGGAGATTAATTGTCAAGAAGATTCAAGAGTCATTGTTGTAGGCGATATACATGGGCAGTTTCATGATTTAATGTATATTTTTAAGCATGCAGGAGTGCCTTCTGAGAACCAGTTTTATATTTTCAATGGAAATTATGTGGATAAAGGAGCTTGGGGCATTGAAGTGTTTTTGGTCTTGCTGGCTTGGAAGGTCTTGATGCCTAACAGAGTGTATCTACTCCGTGGAAATCATGAATCAAGATATTGCACTACTAAATATGGTTTTAAGAAGGAGGTGTGGACCAAATATGGCGATCAGGGTGAAGATGTCTACAATAAATTCCTAGAGTGTTTCAAGGAGCTTCCATTAGCTTCGGTTATTGCCAACCGTGTTTATACAACTCATGGAGGACTTTTCCGTAGCATTGTTGCTGCCCCTTCAGGAAAGCCAAAACAGAAGACGACACAAAGAGTGGATCTTGGTTCTTTAGCTGAGTTATCTCAAGTTAAACGAGCTTGTGTAGATTCCCCTAATGAAGGTCCTAACATATTATTGAGTGATGTTCTTTGGTCAAAACCATCTAACAGGGATGGTCTGAGGGATAATGCAGGTCGAAAATTAGGTTTATGGTGGGGTCCTGATTGTACTGAGGCTTTCTTAAAGCAGCACAATCTAAAGCTGATCATCAGATCACATGAAGGACCTGATGCAAGGGCTGGTAGGGATGATTTTGGAGATATGTTGAGTGGATACAGCATTGATCATGATGGAGAATCAGGAAAGCTATATACACTTTTTAGTGCTCCAGACTACCCACAGTTTGGGAAAAGGAGATATAACAATGAAGGAGCATATGCAATATTGAAGCCGCCTGATTTTTCAAGTCCTTCCTTTCACCCATTCAAATCAGCAGAAAGACCAATGGTGGATCCTTATGATGATTTTGATGCCAATGACATGGACTTGAGTGAACTAGACTCTTCTCAAATTCACGGCCAGGCGTCAACCTCTGCCCTTTCTGCTCCTCAAAAATTTTATCCCACCGGGGAGAGACCCGAGTTTGACTTTGGGGCATTAGGCATATATAATGCCCCATGTTGGAGTGTTCAGCTTCCTGATGGTTCAGGTGGTACTCAAGTTTTGCAGGTTCCAAGGGCTCCTCTAGTGGAAGGATTGCCTCTGCCTCCCAACATACAGGAGCCACACAAGTCTGCTTATGAGTATTTGTTCGAGCTCGTTGCTGCGTTGAAACATACGATTGTAACAAGGGAGACTGAGAACAGGGCCCGTGTGTCAGCTTTGAGAAATAGAGCTAGGAAACGAAAGGGTAGGGGTAATAGCAGTTGA 1683 0.4278 MRDSPIVESTKISNGDVLIDEAQSMTHEDEMLDVEHVLRFENGIDEVQESLLPSCFQEFLLWPPDDCVTLEWVQDMMFILEQASRKMLPSELCHVVPTILVDKLTDTACSILCKEPNCVEINCQEDSRVIVVGDIHGQFHDLMYIFKHAGVPSENQFYIFNGNYVDKGAWGIEVFLVLLAWKVLMPNRVYLLRGNHESRYCTTKYGFKKEVWTKYGDQGEDVYNKFLECFKELPLASVIANRVYTTHGGLFRSIVAAPSGKPKQKTTQRVDLGSLAELSQVKRACVDSPNEGPNILLSDVLWSKPSNRDGLRDNAGRKLGLWWGPDCTEAFLKQHNLKLIIRSHEGPDARAGRDDFGDMLSGYSIDHDGESGKLYTLFSAPDYPQFGKRRYNNEGAYAILKPPDFSSPSFHPFKSAERPMVDPYDDFDANDMDLSELDSSQIHGQASTSALSAPQKFYPTGERPEFDFGALGIYNAPCWSVQLPDGSGGTQVLQVPRAPLVEGLPLPPNIQEPHKSAYEYLFELVAALKHTIVTRETENRARVSALRNRARKRKGRGNSS. 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08838 560 Gene3D - 66 449 IPR029052 -
Seca4g08838 560 Pfam Calcineurin-like phosphoesterase 128 347 IPR004843 GO:0016787
Seca4g08838 560 PRINTS Serine/threonine phosphatase family signature 279 306 IPR006186 GO:0016787
Seca4g08838 560 PRINTS Serine/threonine phosphatase family signature 228 254 IPR006186 GO:0016787
Seca4g08838 560 PRINTS Serine/threonine phosphatase family signature 373 389 IPR006186 GO:0016787
Seca4g08838 560 PRINTS Serine/threonine phosphatase family signature 191 215 IPR006186 GO:0016787
Seca4g08838 560 PRINTS Serine/threonine phosphatase family signature 158 185 IPR006186 GO:0016787
Seca4g08838 560 PRINTS Serine/threonine phosphatase family signature 128 155 IPR006186 GO:0016787
Seca4g08838 560 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 65 542 - -
Seca4g08838 560 SMART pp2a_7 96 417 IPR006186 GO:0016787
Seca4g08838 560 ProSitePatterns Serine/threonine specific protein phosphatases signature. 192 197 IPR006186 GO:0016787
Seca4g08838 560 SUPERFAMILY Metallo-dependent phosphatases 92 421 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08838 Seca-Chr4 210927448 210932414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08838 60 339 Calmodulin-binding Proteins AT5G63870 53.265 1.16e-100 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08838 K04460 - gmx:100779241 951.044