Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08835 ATGGGTGCTTCCGGGAGATGGTTTAAATCACTTCTTCCTCTTAGAAAGACCTCAACCTCAACAACTGATCAGGGTGTTGATAACAAGAGTAAGAAGAAGTGGAAGCTATGGAGGACCTCTTCAGAAGGGTCTTCCACCTCTATGAAGAAGGGTGGTGCTGCTGTATCCGATTCTTCTTCGCTTACTGCTGCAGTGGCTGTGGTGGTTCGAGCTCCACCCAAAGATTTCATGGTCATCAAGCAGGAATGGGCTGCCATTCGCATTCAGGCTGTGTTTCGAGCATTTTTGGCTAGACGAGCTTTGAGGGCCCTGAGAGCAGTGGTAAGGCTGCAAGCTATATTTCGAGGCCGGCTAGTAAGAAAGCAAGCAGCTGTTACTCTAAGGTGCATGCAGGCTCTTGTTCGAGTTCAGGCACGTGTGAGGGCAAGGAATGTGAGGAACTCTCCAGAAGGGAAAGCAGTTCAGAAATTATTAGAAGAGTATCGCAACCAAGCTGATCCTGTTAAGCTAGCTGAGCAAGGATGGTGTGACATTCCTGGAACTGCAGATGAAGTTAAAGCAAAGCTAAGAATGAGGCAAGAAGGAGCCATCAAGAGAGATAGAGCAATGGCATACTCTCTCTCCACACTGGTAATGAAATTGAGTGCGTGTTTGCAGCAATCATCAAGAGTGAGTGCTAGTCCAAACTCAAAAGCTACCAAGGTAGTGACTCTTCTCAAGCATCACAACATAGACAATAAGAGCTTAGGAAGTAGCTTGTTAGAACGCTGGATGACAACCAAGCCATGGGAGAGTCCAATGTCAAGGAAGAGTGAAGAGCTTGTTCCTTCCATTCAATCAAGAAGGAATGGTGTGACAACAAGGATTTCAGTTAAATCTCTTACAACATGTCAACCAACTTCATCATCTTCGACCATAAGCTCTGAATACAATTATGATGATAGCCTTGTATCAACTTCATTTACATCTGGATCTCCATCTCTGCCATCCACCAATACTGTTATGGTGGAAGCAACAGAGGAAAAAGATGTTCATCAACCTAGCTACATGAATTTGACAGAATCATCTAAGGCTAAATTGAAATCTTGCAGATGTTCTTCACAGAATTCAAAGAGGCTTGTAGGGGAGGATTGTCTGTCTCATAGCACAATTCTGAATGGAGATACTAGAAGCAGTTCTGGTTCTGATCCTTCAGTGAATGTATGGAAGGATCTTTGTGCAACACCTCTAAGGGCAAGTTATCAAAAACGATTTGCTGGGAGATAA 1266 0.4415 MGASGRWFKSLLPLRKTSTSTTDQGVDNKSKKKWKLWRTSSEGSSTSMKKGGAAVSDSSSLTAAVAVVVRAPPKDFMVIKQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQARVRARNVRNSPEGKAVQKLLEEYRNQADPVKLAEQGWCDIPGTADEVKAKLRMRQEGAIKRDRAMAYSLSTLVMKLSACLQQSSRVSASPNSKATKVVTLLKHHNIDNKSLGSSLLERWMTTKPWESPMSRKSEELVPSIQSRRNGVTTRISVKSLTTCQPTSSSSTISSEYNYDDSLVSTSFTSGSPSLPSTNTVMVEATEEKDVHQPSYMNLTESSKAKLKSCRCSSQNSKRLVGEDCLSHSTILNGDTRSSSGSDPSVNVWKDLCATPLRASYQKRFAGR. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08835 421 Gene3D - 79 129 - -
Seca4g08835 421 Pfam IQ calmodulin-binding motif 105 122 IPR000048 GO:0005515
Seca4g08835 421 Pfam IQ calmodulin-binding motif 83 102 IPR000048 GO:0005515
Seca4g08835 421 ProSiteProfiles IQ motif profile. 81 109 IPR000048 GO:0005515
Seca4g08835 421 ProSiteProfiles IQ motif profile. 105 132 IPR000048 GO:0005515
Seca4g08835 421 PANTHER IQ-DOMAIN 5-RELATED 1 396 - -
Seca4g08835 421 SMART iq_5 80 102 IPR000048 GO:0005515
Seca4g08835 421 SMART iq_5 103 124 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08835 Seca-Chr4 210858006 210860852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08835 1 405 IQD Protein Family AT1G72670 44.828 2.18e-92 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08835 - - gmx:100788715 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08835 4 210858006 210860852 Seca4g08835 4 210858006 210860852 PCT