Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08822 ATGGAATCTTCATCTTCTTCCCATGTTCTTCGAATCAAATACGATGTCTTCATCAGTTTTAGAGGCACAGATGTACGCTCTGGTTTTCTTAGCCATTTGAAAAAGGAACTGAAGCAGAAGCAAGTTGATGCCTTTGTGGATGACAGACTTGAAGGAGGGGATGAAATCTCACCAGCACTTGTCAAAGCCATTGAAGGATCACTTATTTCTTTGGTCATATTCTCCGAAGACTACGCTTCTTCAAAGTGGTGCTTGGAAGAGCTTGTGAAAATAATTGAATGCATGGAGAGAAATAAGCAAATTGTGATTCCTGTTTTCTACAACATAGATCCATCCCATGTACGGCACCAAAAAGGGACTTATGGAGATGCATTAGCTAAACATGAAAAATATAAAGGAAACATAGCCAAGGTGCAAAATTGGAGATCTGCTTTGAATAAAACTGCTAATCTTTCTGGATTTCATTCATCAAAATTTGGGGATGAAGTTGAGCTTATAGAAGAAATTGTTAAATGCTTGTCCTCCAAGTTGAATCTTATGTACCAAAGTGAGTTAACAGACCTTGTTGGAATTGAAGAACGGATTGCAGATTTGAAGTCACTACTGTGCCTAGGGTCGACACTAGAAGTTCTTGTCATTGGAATTTGGGGCATGGGTGGGATTGGTAAGACAACTATTGCAGCTGCAGTATATAACTGCCTTTGTTTTGAATTTGAAGGGTGTTGCTTTATGGCAAACATAAGGGAAGAATCAGAGAAACATGGAATGATTAATCTAAAGAATAAGATTCTCTCTATATTACTAAATGAAAACAATCTATATATTGGCACACCTAATGGAGTGCCCCCTTATGTTAAAAGAAGGTTGGTTCGTAAAAAGGTTCTTCTTGTTCTTGATGATATCAGTGATTCAGAGCAGTTAGAAAATTTAGTTGGAGCACTTGATTGGTTTGGCTCTGGTAGTAGAATCATTGTAACAACTAGAGATAAGCAAGTGCTTGGTAAAAAAGTTGACACTATATATGAGGCTAAGGCATTAAACACTGAGGAAGCTATTCAACTTTTCATTATGAATGCCTTTGAACATAGGTATCTTGACATGGAGTGGATTGAGCTATCAAGAAGGGTGATTAAGTATGCTAATGGAAACCCATTAGCTTTAAAAGTTTTGGGATCTTTTCTTTATGGTAAAAGCAAAATAGAATGGGAAAGCCAATTGCAGAAACTTAAGAAAATGCCTCACTCAAAAGTTCAAAATGTGTTGAGATTGACCTATGATAGACTTGATCGAGAAGAGAAGAACATATTTCTGTATATTGCATGTTTTCTGAAAGGATATGAAGTTCACAGAGTAATAGTTCTGCTTGATGCTTGTGGTTTCTCAACAATTATTGGGTTAAGAGTCCTTAAAGATAAAGCCCTTATAATTGAAGCCAAGGGCTCAGGAAAATCGATTGTATCAATGCATGACTTGATACAAGAAATGGGTTGGGAGATTGTTCGAGAAGAATGTATTGAAGACCCCGGGAAACGCAGTAGGTTATGGGATCCTAATGATATTCATCAAGTATTGACAAACAACACGGGAACTAAAGCCATTCAAAGCATAACTCTGAACGTCTCAAAATTTGATGAGCTGAGCTTAAGTTCTCGAGTCTTTGCTAGCATGAAACAGTTAAAGTTTCTTAATTTTAACCAACACTATGGCGATGAGCAAATCCTGTATCTTCCTGAAGGCCTTGCATCTTTGCCAAATGACATGAAACTTTTTCATTGGGTTAGTTATCCTTTGAAATCCTTGCCTCAATCTTTTTGTGCAGAAAACCTTGTTGAGCTCAAAATGACTTGGAGCCGAGTGGAAAAACTTTGGGATGGGATCCAGAATCTTGAACATTTAAAGAAAATTGACCTCAGTAATTCCAAATATCTGCTAGAGCTCCCAGATTTTTCAAAGGCCTCAAATCTTGAAGAAGTAGAACTCTATGCTTGCAGAAATTTGCACAGTGTTCATCCATCTATTCTCTCTCTCAAAAAGCTTGTGCGGTTAAACTTATTTTACTGCAAAGCGCTTACCAGTCTTAGAAGTGATACCCATTTAAGATCACTCCGTGACCTCTTCCTTGGTGGCTGCTTAAGACTCAAGGATTTTTCAGTGACTTCAGAGAATATGAAAGACTTAATCTTAACTTCAACGGCTATTAATGAATTGCCCTCATCAATTGGGAGTCTCAAAAAGCTTGAAACATTGACTCTTGATCACTGCAAAAGTCTAAACAATCTTCCAAGCAAGGTTGCTCACTTAAGCTCACTTCGTGCTCTTCATATTCATGGTTGCATACAACTTGATGCATCAAATCTGCATATCCTAGTTAATGGTTTAGGGTCTTTGGAAACATTAAAGCTGGAAGAATGTTGTAACTTATTTGAAATTCCTGATAACATTAGCCTCTTATCCTCATTGCGTGAGTTGTTACTAAAAGGAACAGATATTGAGAGATTTCCTTCAAGCATCAAGCACCTTTCTAAGCTGGAAAAGCTTGACATAAAGGGTTGCAAGAGGCTTCGTTATCTGCCAGAGCTTCCACCATCAATATAA 2595 0.3757 MESSSSSHVLRIKYDVFISFRGTDVRSGFLSHLKKELKQKQVDAFVDDRLEGGDEISPALVKAIEGSLISLVIFSEDYASSKWCLEELVKIIECMERNKQIVIPVFYNIDPSHVRHQKGTYGDALAKHEKYKGNIAKVQNWRSALNKTANLSGFHSSKFGDEVELIEEIVKCLSSKLNLMYQSELTDLVGIEERIADLKSLLCLGSTLEVLVIGIWGMGGIGKTTIAAAVYNCLCFEFEGCCFMANIREESEKHGMINLKNKILSILLNENNLYIGTPNGVPPYVKRRLVRKKVLLVLDDISDSEQLENLVGALDWFGSGSRIIVTTRDKQVLGKKVDTIYEAKALNTEEAIQLFIMNAFEHRYLDMEWIELSRRVIKYANGNPLALKVLGSFLYGKSKIEWESQLQKLKKMPHSKVQNVLRLTYDRLDREEKNIFLYIACFLKGYEVHRVIVLLDACGFSTIIGLRVLKDKALIIEAKGSGKSIVSMHDLIQEMGWEIVREECIEDPGKRSRLWDPNDIHQVLTNNTGTKAIQSITLNVSKFDELSLSSRVFASMKQLKFLNFNQHYGDEQILYLPEGLASLPNDMKLFHWVSYPLKSLPQSFCAENLVELKMTWSRVEKLWDGIQNLEHLKKIDLSNSKYLLELPDFSKASNLEEVELYACRNLHSVHPSILSLKKLVRLNLFYCKALTSLRSDTHLRSLRDLFLGGCLRLKDFSVTSENMKDLILTSTAINELPSSIGSLKKLETLTLDHCKSLNNLPSKVAHLSSLRALHIHGCIQLDASNLHILVNGLGSLETLKLEECCNLFEIPDNISLLSSLRELLLKGTDIERFPSSIKHLSKLEKLDIKGCKRLRYLPELPPSI. 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08822 864 Gene3D - 11 179 IPR035897 -
Seca4g08822 864 Gene3D Ribonuclease Inhibitor 515 716 IPR032675 -
Seca4g08822 864 ProSiteProfiles TIR domain profile. 12 177 IPR000157 GO:0007165
Seca4g08822 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 439 IPR027417 -
Seca4g08822 864 Pfam TIR domain 13 190 IPR000157 GO:0007165
Seca4g08822 864 SUPERFAMILY L domain-like 488 858 - -
Seca4g08822 864 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 179 - -
Seca4g08822 864 Pfam NB-ARC domain 197 419 IPR002182 GO:0043531
Seca4g08822 864 PRINTS Disease resistance protein signature 380 394 - -
Seca4g08822 864 PRINTS Disease resistance protein signature 212 227 - -
Seca4g08822 864 PRINTS Disease resistance protein signature 838 854 - -
Seca4g08822 864 PRINTS Disease resistance protein signature 288 302 - -
Seca4g08822 864 Gene3D - 180 340 IPR027417 -
Seca4g08822 864 SMART till_3 13 151 IPR000157 GO:0007165
Seca4g08822 864 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 769 IPR044974 GO:0006952
Seca4g08822 864 Gene3D Ribonuclease Inhibitor 717 864 IPR032675 -
Seca4g08822 864 Gene3D - 345 429 IPR042197 -
Seca4g08822 864 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 154 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08822 Seca-Chr4 210597098 210602433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08822 14 846 WRKY Transcription Factor Family AT4G12020 33.333 3.50e-121 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08822 - - gmx:100799103 1428.69