Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08811 ATGTCTAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTTCTTCAGGAAACAGAACTGAAATTGGAACCAATTACCCTCAACAATACTTTGCTCCACCACAAACTCAAACTCAACCTCCAGCTAAGAAAAAGAGAAACCTTCCTGGCAACCCAGACCCAGAAGCTGAAGTTATAGCCTTGTCTCCAAAGACTCTTCTGGCCACAAATAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAATCTTCAACTTCACAGAAGAGGGCACAATTTACCATGGAAACTGAAGCAGAGAACAGGCAAAGAGATAAGGAAGAAGGTATATGTGTGCCCAGAACCAACTTGTGTGCACCATGACCCATCAAGAGCCCTGGGGGACTTAACTGGAATTAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCATTCCAAGACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCATCTTCTCAAGGAGGGACAGTTTCATAACACACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGGTATGACAGGTATACCCAACCCACTCCTTCACTCTCCTCCTCCTCAACCTGCTGTCTCTCTCCAAACTCCTCAAGATTTTCACAATTTCCCAAAGAAAGAGCAGCAAAATTTCACCTTGAGGCCAGAAATACCCCCATGGCTTGCTCCACCCACCATTGACCTTTCCTCTTCCACCTCCCCATCAATCTTCTCTCAAACCCCAAGATTGGATCAAGATCTAAGCCTCCATGAAAACCCTAACCCTAGTAGACTTGGTCCCACACTTCCTGCCTACCAACCAGCTGCTCCTTCACCTCACATGTCAGCTACAGCATTGTTGCAGAAAGCAGCACAGATGGGAGCAACGATGACCAAAACCAATTCCTCATCACAACCCATGATTAGGACCCACCAGCAGGCTCACGTGTCTGACAATGGTAACAACATCTCATCAAGTGGTAATTTTGGTTTGAATTTGTCCTCATGTGAAGACCATACCCAGATGAGTACTACAGGTTTTAGCCATGGCTTGGCATCTTTTGGGAATAAAGCTGTTGCTGCTTCTGCTCCTTCTTCTTTCCTTCATCATGTCATCAATTCTTTCTCTTCTGCTTCTGGGTTTGAAGGAACTTCTTTTGAGGATTCGTTTGGTGGTATTCTCAATTCAAACAAAGAAGATGGTCATTCCAACGTCATAACAAAAACAAACACCACTGATGGTGGAGGAAATAATGAAGGCTTGACGAGAGATTTCTTGGGTCTTAGACCTCTCTCTCATAGTGATATTCTCACCATTGCTGGTATGGGAAATTGCATGAACTCTTCCCATGATTCCCAAAAGCCGTGGCAAGGTTAG 1449 0.4472 MSNLTSASGEASASSGNRTEIGTNYPQQYFAPPQTQTQPPAKKKRNLPGNPDPEAEVIALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTGKEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEESARGMTGIPNPLLHSPPPQPAVSLQTPQDFHNFPKKEQQNFTLRPEIPPWLAPPTIDLSSSTSPSIFSQTPRLDQDLSLHENPNPSRLGPTLPAYQPAAPSPHMSATALLQKAAQMGATMTKTNSSSQPMIRTHQQAHVSDNGNNISSSGNFGLNLSSCEDHTQMSTTGFSHGLASFGNKAVAASAPSSFLHHVINSFSSASGFEGTSFEDSFGGILNSNKEDGHSNVITKTNTTDGGGNNEGLTRDFLGLRPLSHSDILTIAGMGNCMNSSHDSQKPWQG. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08811 482 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Seca4g08811 482 MobiDBLite consensus disorder prediction 214 233 - -
Seca4g08811 482 MobiDBLite consensus disorder prediction 259 303 - -
Seca4g08811 482 MobiDBLite consensus disorder prediction 259 286 - -
Seca4g08811 482 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Seca4g08811 482 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Seca4g08811 482 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Seca4g08811 482 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Seca4g08811 482 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 472 IPR031140 -
Seca4g08811 482 FunFam protein indeterminate-domain 12-like 50 118 - -
Seca4g08811 482 MobiDBLite consensus disorder prediction 1 43 - -
Seca4g08811 482 SMART c2h2final6 71 93 IPR013087 -
Seca4g08811 482 SMART c2h2final6 147 167 IPR013087 -
Seca4g08811 482 SMART c2h2final6 112 142 IPR013087 -
Seca4g08811 482 MobiDBLite consensus disorder prediction 1 55 - -
Seca4g08811 482 Gene3D Classic Zinc Finger 125 204 - -
Seca4g08811 482 Gene3D Classic Zinc Finger 50 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08811 Seca-Chr4 210280723 210283675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08811 1 324 IDZ Gene Family AT1G55110 58.960 2.00e-127 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g08811 zf-C2H2_jaz 7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08811 K25870 - qsu:111995117 613.994