Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08805 ATGAACAGCAGCATCTCAAGAAATGGTACCACCACACAGGCTTGTGCTGCTTGTAAGTACCAACGCAGGAAGTGCGGCCCTAACTGCATTCTCGCACCCTATTTTCCTCACGATCGTCAAAAGCAATTTCTTAACGCTCATAAATTATTTGGTGTCGGCAAAATCAATAGTATGATCAAGAAAGTAGATCCTTCTCTCCGAGATATAACTATGGATACTGTCATCTATCAATCTGACATGCGTGCTATTGATCCCGTTGGAGGTTGTTATAGGATTATACAACAGCTTCAATCTCAAATTGAATACCGCAGAGCAGAGCTTCATTACACCCTTCAACAACTTGCTATTTTGAAAGCACAAGCTAATAATAATCATTATGAGAATGTTGTTAGTGCAGACTATAATTCTCTTCTTTCCTCAACTCATTATCTTGAACAAATGTCACAGCAGGAACAATATATTAATCCCAATTACAGCTTGAATCCTTATCAAGAAGAAGACGTCGATGTGTGGGCGAACTCTATGCCTTTGGAGTCATTAACATTGCAAGACAAGAAGGAAGAAGGAATAACTCATTATGAGAATAATGATCAAAAGCCTATTCTTGACCTCATCAAAGAAATTAATTCAGATACAGGCTGA 642 0.3847 MNSSISRNGTTTQACAACKYQRRKCGPNCILAPYFPHDRQKQFLNAHKLFGVGKINSMIKKVDPSLRDITMDTVIYQSDMRAIDPVGGCYRIIQQLQSQIEYRRAELHYTLQQLAILKAQANNNHYENVVSADYNSLLSSTHYLEQMSQQEQYINPNYSLNPYQEEDVDVWANSMPLESLTLQDKKEEGITHYENNDQKPILDLIKEINSDTG. 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08805 213 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Seca4g08805 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 149 - -
Seca4g08805 213 Pfam Lateral organ boundaries (LOB) domain 14 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08805 Seca-Chr4 210173707 210174348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08805 13 127 AS2 family AT3G13850 61.739 5.61e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g08805 LOB 1.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08805 - - cam:101498778 230.72