Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08803 ATGGCAACAACCAACGGAGAATTATCCCCCAGAAGGGTCCAATACCCATTAGACTCATGCTCCTACCAACTCCTCGACGAGATCGGCGCCGGTGTAAGTGCCCTTGTCTACAAAGCAATCTGCATCCCCATGAACTCTTCACCCGTCGCAATCAAATCCATTGATCTTGACCGTTCACGCCCTGACTTAGACGATGTTCGACGTGAAGCAAAAACCTTATCCCTCCTTTCTCACCCAAACATCCTCAAAGCCCACTGTTGCTTCACAGTGGACCGTCGTCTTTGGGTGGTCATGCCATTCATGGCAGGAGGCTCTTTACAGTCCATCATTTCTCACTCATTCCCTGACGGCTTAACTGAACAATGCATCGCTGTGGTTCTCAAAGAGACTCTCAACGCTCTCTCTTATCTCCATGGCCAAGGCCATCTCCACAGAGATATAAAAGCTGGTAACATCCTTATTGACTCCAATGGATCAATCAAGCTTGCAGATTTTGGTGTCTCTGCTTCAATCTACGAGTCCATGAGTTCCTCCTCTGGAGGAACATGCTCTTCTTCTTCTTCATCTCTCATGTTCACTGAATTTGCTGGCACACCTTATTGGATGGCTCCAGAGGTTATTCACTCACATAATGGATACAGTTTCAAGGCTGATATTTGGTCATTTGGAATAACCGCTTTGGAGTTAGCACATGGAAGGCCACCACTCTCTCATCTTCCACCTTCCAAGTCAATGATGCTCAAGATCACAAAACGGTTTCGTTTTTCGGATTTTGACAAGTATAGAAAGGAACATGGCAAGAAATTCTCGAAGGCTTTTAAGGATATGGTGGCTTCTTGCCTTGATCAGGATCCTTCAAAGAGACCTACTGCTGAGAAGTTGCTTAAGCATCCTTTCTTTAAAAACTGTAAGGGCACGGAGTTTCTAGTGAAGAATGTGCTGCAAGGATTGCCTAGCGTTGAGAAAAGGTATAAAGAGAGCAAGATTCTGCATGGAATGGATGATGATGACGACGATGATGATGACGACATGGAGCATAACGTGAAACAGAGAAGGATAAGCGGTTGGAACTTCAATGAAGATGGCTTGAAACTCGAGCCGGTATTTCCGTATGATGATACGGTTGTTAAAGAAGTTCAGTTTGAAGGAAAAACGGTTACGGATGGCAAGGCAGAGGAGCATGCTGATGCTGTTGGGGAATCAGGAACCATGAGAGAGCAAAATCCTGATGTGGAAGTGATGGAGACATTGAGGTCTTCATGGTTGGAAAAAGCTGGTGGTGTTCAGATTGGAGGGAGAGTTGTGAATCTGAACAACCGTGAAGCTATGTTGGCTACTTTGAGTGTGTTGAAAGGGAGCTTGGAACAAGAGCTGGGACAAGTCAAGTTTCTGATGAATTTGATGCAAGGAGGAGAGGAGAGTCAAGTGGGTGATAATAGTGAGGAGAAAATGGCGCAGGAGATTTCTAGGCTGAGGACTGAATTGGAAAATGAGAGGAAGAAGAGCTTGCAGTTGGAGTTGCAATTGGAGACTTTCAAGCTTCACCTTTCTTGA 1554 0.4537 MATTNGELSPRRVQYPLDSCSYQLLDEIGAGVSALVYKAICIPMNSSPVAIKSIDLDRSRPDLDDVRREAKTLSLLSHPNILKAHCCFTVDRRLWVVMPFMAGGSLQSIISHSFPDGLTEQCIAVVLKETLNALSYLHGQGHLHRDIKAGNILIDSNGSIKLADFGVSASIYESMSSSSGGTCSSSSSSLMFTEFAGTPYWMAPEVIHSHNGYSFKADIWSFGITALELAHGRPPLSHLPPSKSMMLKITKRFRFSDFDKYRKEHGKKFSKAFKDMVASCLDQDPSKRPTAEKLLKHPFFKNCKGTEFLVKNVLQGLPSVEKRYKESKILHGMDDDDDDDDDDMEHNVKQRRISGWNFNEDGLKLEPVFPYDDTVVKEVQFEGKTVTDGKAEEHADAVGESGTMREQNPDVEVMETLRSSWLEKAGGVQIGGRVVNLNNREAMLATLSVLKGSLEQELGQVKFLMNLMQGGEESQVGDNSEEKMAQEISRLRTELENERKKSLQLELQLETFKLHLS. 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08803 517 Coils Coil 481 508 - -
Seca4g08803 517 SMART serkin_6 22 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08803 517 Gene3D Transferase(Phosphotransferase) domain 1 104 351 - -
Seca4g08803 517 FunFam Serine/threonine-protein kinase BLUS1 11 100 - -
Seca4g08803 517 ProSitePatterns Protein kinases ATP-binding region signature. 28 52 IPR017441 GO:0005524
Seca4g08803 517 ProSiteProfiles Protein kinase domain profile. 22 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08803 517 SUPERFAMILY Protein kinase-like (PK-like) 21 304 IPR011009 -
Seca4g08803 517 FunFam Serine/threonine-protein kinase BLUS1 104 343 - -
Seca4g08803 517 Gene3D Phosphorylase Kinase; domain 1 11 100 - -
Seca4g08803 517 Pfam Protein kinase domain 22 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08803 517 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 14 418 IPR047173 GO:0043539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08803 Seca-Chr4 210116500 210118053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08803 8 504 MAP Kinase Kinase Kinase Kinase AT4G14480 55.268 0.0 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Seca4g08803 Pkinase 5.5e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08803 K08835 - gmx:100820227 671.389