Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08800 ATGGTATTGCAGCTTATTTTCCTGCTAATTAAGCTACATTTAGTTATCAGTACTCCACATCTTCATGAATATGCAGCTACCAATCTGCACCATTCAAAAATCAGACCACATTCAATTATTGCATTCCCACCATCAAAGTCATCTTCTGGAGTTCCTGCAAGTATTGCACTTCCACCTTCCAAGGCATCTTCCAGAGTTCCGGGAAGTATAGCACTTTCACCTACCAAGTCATTCCCCAAAGTTCGTACAAAGAAATGGACGCCTAGTCCTGTGCATTCTCCAACATCACACCATAGGCATCACTATTCCAGAACAAATTCCAGAAACCAAATTCCTCCTGGGCCAATCTATCCAATCCATCCTCATACTCATCAAGATGCAGGTCCTCCAGTCTTGAAAGCAGGACCTCCTTTCTCTTCACCTATGAGATGGGGTTTTCATGCACCTGCACCAGCACCAGCACCATCACCAGCAGTTCTATCAAACCACTTAAACACACCCTCTCCTTCACCTAGAATTTCACCTCTAGGTTCATCATCAAAGAAGATGAAGACTCCACCACCAGCACATGCTTTGGCACTGCCACCTTCACCACCTAATAAGGAGCCCTTGACCTATACACCTCCTGGATCCCCTTGTGGTTGTGTATGGCCGCTTCAAGTTAAACTCCACATCAGCATTGCAATATACAAGTTTTTTCCTTTGGTTTCCGAGCTAGCTGATGAAATTGCAGCCAGTGTTTTGCTGAACCGTAATCAAGTACGCATTGTGGGAGCAGATGCAGCAAGTAACCAAGTAGAAAAAACCACTGTTCTCATAAACTTGGTACCCCAAGGAACAAAATTTGATGACACAACAGCATTTTTAATATATAAGAAATTCTGGCACAAGGAGATTCTGGCTGATGCTTCACTCTTTGGTGCCTATGAAGTACTCTATGTTCATTATCCAGGCCTTCCACCATCTCCACCTTCAACTACTTCTGGTATTGTTGTTAAACCATACCCTGGTCTTGGAAACAATGGAACAATTATGAAACCTTTAGGAGTAGATGTCTCAAGGAAGAAAAAAGAAGGGAGTGGTGGGAGAATGATTATTATGATTGTGTTGTCATCTTTTGCTGCATTTGTTCTATTCATTGGAGTTGCCTGGTTTTGTCTGTTGAAATGTGGTTCCTGTGCTCTTGAACCTGAACAAATTCCAGACATTATATTTTCATCCTCTTCAAAGAGAACAGCCTCAGGTAACAGATATAAATTTGCTACTATGTTCTTCAATCTTTGGTTGCAAATGGAACTCACTGTAAATATAAAACTGAATATGCACAATGCAGGGGCTACTAGGTCTTTGAATTATGGAAGCATGCCAGGTTCTAGATCAATGTCCTTCAGTTCTGGAACAATAACATATACAGGATCTGCTAAGATCTTTTCTTTGAATGAAATAGAGAAAGCAACAAATAACTTCAATTCTTCAAGAATATTAGGAGAAGGTGGCTTTGGTCTTGTTTACAAAGGTAGCCTATATGATGGGAGGGATGTGGCAGTTAAGATTCTCAAAAGAGATGATCATCATGGTGGCCGTGAATTCTTGGCAGAAGTTGAGATGCTTAGCCGCTTACACCATAGAAATTTGGTTAAATTGATTGGTATATGCATAGAGAAACAGACTCGCTGCCTAGTCTATGAACTTGTCCCTAATGGCAGTTTGGAATCCCACTTACATGGTGCTGACAAGGAAACAGATCCACTCGATTGGGATTCTAGGATGAAGATTGCACTTGGTGCAGCTAGGGGATTGGCTTATCTGCATGAAGATTCAAATCCATGTGTCATACACAGGGACTTCAAGTCAAGCAACATCTTGTTGGAATGTGATTTTACACCCAAGGTGTCAGATTTTGGATTGGCTAGAACAGCACTGGAAGAGGGAAACAAACACATCTCTACACATGTTATGGGAACATTTGGCTACTTAGCTCCTGAATATGCAATGACTGGCCATGTTCTTGTCAAGAGTGATGTTTACAGCTATGGAGTTGTACTCCTTGAGCTCCTAACTGGAAGAAAGCCTGTGGATTTGTCACAACCACCAGGTCAAGAAAACCTTGTTACATGGGTTCGTCCACTTCTGACAAGTAAGGAGGGTTTGCTTAAGATCATAGACCCAGTTATAAAGCACAGCGTTTCACTTGATACTGTGGTAAAAGTTGCAGCAATTGCATCCATGTGTGTGCAACCAGAAGTCACTCAACGTCCTTTCATGGGTGAAGTTGTTCAGGCATTGAAGCTGGTGTGCAGTGATTTTGAGGATACTAGTTATGTAAGATCAGGGAGTTTTCGACAAGATAGTCTTCTAACAGATGTAGAAGGGAAATTATCCAGTGTTACAGGTGAGAGGATGGACTTTTCAGTGTAA 2418 0.4173 MVLQLIFLLIKLHLVISTPHLHEYAATNLHHSKIRPHSIIAFPPSKSSSGVPASIALPPSKASSRVPGSIALSPTKSFPKVRTKKWTPSPVHSPTSHHRHHYSRTNSRNQIPPGPIYPIHPHTHQDAGPPVLKAGPPFSSPMRWGFHAPAPAPAPSPAVLSNHLNTPSPSPRISPLGSSSKKMKTPPPAHALALPPSPPNKEPLTYTPPGSPCGCVWPLQVKLHISIAIYKFFPLVSELADEIAASVLLNRNQVRIVGADAASNQVEKTTVLINLVPQGTKFDDTTAFLIYKKFWHKEILADASLFGAYEVLYVHYPGLPPSPPSTTSGIVVKPYPGLGNNGTIMKPLGVDVSRKKKEGSGGRMIIMIVLSSFAAFVLFIGVAWFCLLKCGSCALEPEQIPDIIFSSSSKRTASGNRYKFATMFFNLWLQMELTVNIKLNMHNAGATRSLNYGSMPGSRSMSFSSGTITYTGSAKIFSLNEIEKATNNFNSSRILGEGGFGLVYKGSLYDGRDVAVKILKRDDHHGGREFLAEVEMLSRLHHRNLVKLIGICIEKQTRCLVYELVPNGSLESHLHGADKETDPLDWDSRMKIALGAARGLAYLHEDSNPCVIHRDFKSSNILLECDFTPKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHVLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVTWVRPLLTSKEGLLKIIDPVIKHSVSLDTVVKVAAIASMCVQPEVTQRPFMGEVVQALKLVCSDFEDTSYVRSGSFRQDSLLTDVEGKLSSVTGERMDFSV. 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08800 805 ProSiteProfiles Protein kinase domain profile. 489 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08800 805 SUPERFAMILY Protein kinase-like (PK-like) 468 762 IPR011009 -
Seca4g08800 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Seca4g08800 805 Pfam Protein tyrosine and serine/threonine kinase 492 762 IPR001245 GO:0004672|GO:0006468
Seca4g08800 805 Gene3D Transferase(Phosphotransferase) domain 1 565 779 - -
Seca4g08800 805 MobiDBLite consensus disorder prediction 46 136 - -
Seca4g08800 805 MobiDBLite consensus disorder prediction 155 202 - -
Seca4g08800 805 CDD STKc_IRAK 495 763 - -
Seca4g08800 805 Gene3D Phosphorylase Kinase; domain 1 462 564 - -
Seca4g08800 805 FunFam Receptor-like serine/threonine-protein kinase ALE2 565 780 - -
Seca4g08800 805 PANTHER OS01G0750732 PROTEIN 200 784 - -
Seca4g08800 805 MobiDBLite consensus disorder prediction 159 181 - -
Seca4g08800 805 ProSitePatterns Protein kinases ATP-binding region signature. 495 517 IPR017441 GO:0005524
Seca4g08800 805 FunFam receptor-like serine/threonine-protein kinase ALE2 462 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08800 Seca-Chr4 209914529 209919581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08800 202 794 Receptor kinase-like Gene Family AT5G56890 59.866 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Seca4g08800 PK_Tyr_Ser-Thr 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08800 - - gmx:100798578 1138.64