Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08782 ATGATTTGGGATGATGAAACATCCTTGCCTTTTATTAAGAACAAAGGTGTTATGAACACCCATGATGAGGATGCTTTTGCTTACTTCAAACACACAAAAGTAATATGCAGAAAGTGTCCAAGGTTACACCACAAGTTCCCCACACTCTTTGCTCACCATCAGAAGACCATAACTGTGGACAGTAAAGCACCTAACTCAGTTAATGAAAGAGAAATTATGAGCTTTTTGGGTGGTTTAGATTTGTGTGATGGAAGATATGATACAGAGAAACATTCATTGTTTCAAACACTAACTGAGGAATCCCATCATTATGACTTCTATCAGACAAACATTGCAGGTGCTAGCCTCAACAAAGGAGGGCCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTACTGGTGAGGCTGCTTGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAATGTGACCCTTCTCTTTTAGTACCTGCTAACACCTTAGCAAATCTCAATCCTATTTGCTCTAGCACTCCTACAGAGAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTTTCTGCAAGCCAGTTGTTTAGAAAACTAACTGTGGAGAGTAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGATAGGTTTATATACATTGAAAACCAATATTTCATTGGGGGATGTCATTTGTGGCAGAAAGATAAGCATAGTGGTTGCAGAAATCTGATTCCCATTGAGATTGCTCTCAAGGTAGTCAATAAAATTAAAGCAAGAGAGAGGTTTGCAGTGTACATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACCAGAGAAACAATGACAATGATGTATAAGTTAATTGGAGAAGCAATAATAGAAAGTGGTGAGCCAGGGCATCCAAGAGACTACTTGAATTTTTTCTGCCTTGCAAATAGGGAAAAGAAGGAAAAAGGAGAGTATCTTCCACCACATTCTCCTCATCCTGAAACACAATACTGGAATGCTCAAAAAAATAGGAGGTTCATGGTTTATGTTCACTCCAAGCTCATGATAGTGGATGACCTATACATACTAATAGGATCAGCAAATGTTAACCAAAGATCCATGGATGGGCAAAGGGACACTGAAATTGCCATAGGGGGCTACCAGTCTCAAGATGGAGCTGATCACCACCACATGAGAAAGGGAGATATTCATGCATACAGAATGTCACTATGGTATGAGCACACTGGGAGTGCTGAGGAATTGTTCTTAGAGCCAGAAAGTTTGGAATGTGTGAAGAGAATGCGCTCAATAGGAGATCAAATGTGGAAAATCTACAGTTGTGAAGAAATTATGGACATGGAAGGTGTGCACCTTGTAACATACCCTGTGAAAGTAACCCAACAAGGGTCAGTGGAGGACCAGACTGATGGTGAGGATCATTTTCCAGATACTAAATCTCTAGTGAAGGGGAAGAGATCAAAATTGTTACCCCCTATCTTTACCACTTAG 1536 0.4062 MIWDDETSLPFIKNKGVMNTHDEDAFAYFKHTKVICRKCPRLHHKFPTLFAHHQKTITVDSKAPNSVNEREIMSFLGGLDLCDGRYDTEKHSLFQTLTEESHHYDFYQTNIAGASLNKGGPREPWHDAHACVTGEAAWDVLTNFEQRWTKQCDPSLLVPANTLANLNPICSSTPTERNWKVQVYRSIDHVSASQLFRKLTVESSIHEAYVEAIRRADRFIYIENQYFIGGCHLWQKDKHSGCRNLIPIEIALKVVNKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYKLIGEAIIESGEPGHPRDYLNFFCLANREKKEKGEYLPPHSPHPETQYWNAQKNRRFMVYVHSKLMIVDDLYILIGSANVNQRSMDGQRDTEIAIGGYQSQDGADHHHMRKGDIHAYRMSLWYEHTGSAEELFLEPESLECVKRMRSIGDQMWKIYSCEEIMDMEGVHLVTYPVKVTQQGSVEDQTDGEDHFPDTKSLVKGKRSKLLPPIFTT. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08782 511 PANTHER PHOSPHOLIPASE D 1 493 IPR015679 -
Seca4g08782 511 Pfam Phospholipase D Active site motif 358 382 IPR001736 GO:0003824
Seca4g08782 511 Pfam Phospholipase D Active site motif 49 85 IPR001736 GO:0003824
Seca4g08782 511 Gene3D Endonuclease Chain A 14 176 - -
Seca4g08782 511 Gene3D Endonuclease Chain A 196 403 - -
Seca4g08782 511 SUPERFAMILY Phospholipase D/nuclease 175 440 - -
Seca4g08782 511 SUPERFAMILY Phospholipase D/nuclease 18 185 - -
Seca4g08782 511 Pfam Phospholipase D C terminal 428 500 IPR024632 -
Seca4g08782 511 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 48 85 IPR001736 GO:0003824
Seca4g08782 511 SMART pld_4 48 85 IPR001736 GO:0003824
Seca4g08782 511 SMART pld_4 355 382 IPR001736 GO:0003824
Seca4g08782 511 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 355 382 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08782 Seca-Chr4 209360427 209362437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08782 1 511 Phospholipase D Gene Family (Wang group) AT1G55180 65.517 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08782 K01115 - gmx:100807431 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08782 4 209360427 209362437 Seca4g08782 4 209360427 209362437 ECH
Seca4g11781 4 258201803 258214729 Seca4g08782 4 209360427 209362437 PCT