Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08778 ATGGACGCCAAAGCAGAACCTCCTCAAAACCCAGCCAAAAGACACAAATGCTCAGCATGCTATAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAAAACCTCATACCACTCTGTGCATCAGCCTAGATGTGGGGTCTGTCAAAAGCACTGCAAATCTTTTGAATCTCTGAGGGAACATCTTACTGGTCCTTTGCCAAAAGGAATTTGTTCAAAGGTTTTCTCTCAACAGGGTTGTCAACTTTGCTTGACACTATTTGCTAACCCCAGATCTCTCACTGAGCATAGAGAAACATGTCGCCTAACTGCCCCTGTTCCTCTAGGTACAAGCGCATTGCCTTATATAAGCCCTCAATTCGATTGTCGAGATTCATCTAATGAAAACCTTGCTGACAGTCGCCCTGGAGCAATTGCAATAGACTGTGAAATGGTTGGTGGTGGAAGTGATGGATCACTGGAACTTTGTGCTAGAGTATGCTTAATTGATGAAGATGAGAACTTAATCTTCCACACGTATGTACGGCCTCAACTCCCTGTTACTAATTATAGATATGATATAACTGGGTTGACAGAAGAGCATTTTAGAGATGCCATGCCACTTAAGAAAGTTCAAGAAAAGATATTGCAAATTTTGTACAATGGAGAATCCATTGGCAGAGCTAGATTGGACGGCGGAAAAGCCAGGTTTCTTGTGGGGCATGATTTAGCACATGATTTAGATTGCTTGAAAATGAATTATCCCGATCACATGCTGAGGTAG 765 0.4196 MDAKAEPPQNPAKRHKCSACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREHLTGPLPKGICSKVFSQQGCQLCLTLFANPRSLTEHRETCRLTAPVPLGTSALPYISPQFDCRDSSNENLADSRPGAIAIDCEMVGGGSDGSLELCARVCLIDEDENLIFHTYVRPQLPVTNYRYDITGLTEEHFRDAMPLKKVQEKILQILYNGESIGRARLDGGKARFLVGHDLAHDLDCLKMNYPDHMLR. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08778 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Seca4g08778 254 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 250 IPR047021 GO:0004527
Seca4g08778 254 Pfam Exonuclease 139 249 IPR013520 -
Seca4g08778 254 SUPERFAMILY Ribonuclease H-like 139 250 IPR012337 -
Seca4g08778 254 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Seca4g08778 254 Gene3D Classic Zinc Finger 2 65 - -
Seca4g08778 254 Gene3D - 135 254 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08778 Seca-Chr4 209281851 209283995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08778 1 254 C2H2 Transcription Factor Family AT3G27970 52.549 2.56e-95 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08778 K18327 - gmx:100788682 456.447