Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08773 ATGAGTCGAGAACAACAAAAGCGAGGGAAGCAGGAAAAAGGTTCTGATGGTGCTGAGAAGGTTATTGTTGCCGTCAAGGCTTCAAAGGAAATTCCAAAGACTGCTCTTGTTTGGTCTCTGACTCATGTTGTTCAACCTGGGGATTGCATTACACTGCTAGTGGTTGTACCCCCACAAAGTTCAGGCCGAAGACTGTGGGGTTTTCCAAGGTTTGCTGGTGACTGTGCCAATAGTCACAAGAAGTCGACTCCAGGAACAACAAGTTCAGAACAGAAGAATGATATCACTGATTCTTGCTCTCAAATGATCCTTCAGCTCCATGATGTCTATGATCCTAATAAGATAAATGTCAAGATTAAAATTGTTTCTGGATCACCCTGCGGATCAGTGGCTACAGAGGCCAAGAAAGCCCAGGCCAATTGGGTTGTATTAGACAAACAGCTCAAACATGAGGAAAAACAGTGCATGGAAGAGCTGCAGTGCAACATTGTGGCTATGAAGCGTTCCCAGCCTAAGGTACTTCGCTTGAATTTGGTTGGATCAAAGAACAAGGATCTTGAAGAAGCTTGTCCATTACCTTCTGATCAAGGTGAGATGCCTGGAAAACAGACCAAAAAGAAGAACGATACTTTAAATTCCATAAAAGGACCAGTTGTCACTCCCACTAGCAGCCCCGAGCTAGGGACCCCGTTTACTGCAACTGAAGCTGGTACCTCATCAGTTTCAAGCTCTGATCCAGGAACTTCACCATTTTTTATCTCTGAGATGAATGCTGAGTCAAAGAAAGAGGAAACCATCAAAGAAAATCAAGAACTCGATGATACTATTTCAGACACAGACAGTGAGCATTTGTCCTCATCTTCAGCAAGCTTGAGATTCCAGCCATGGATCACAGATTTACTTTTACATCAACAATCATCTCAACATACAGAAGAAAGATCAGAGAGATCTCATAATAGGCTTCAATCGTCTACAACTAGAGCTTTGCTAGAGAAATTCTCAAGGCTTGATAGAGAAGCTGAAATTGAAATTTCAAACTACAAGACTGACTTGGATTTTGGTGGAAATGTAAGAGACGCAATAGCATTATCTAGAAATGCTCCGCCAGGTCCCCCTCCGTTATGTTCAGTGTGTCAACACAAGGCTCCTGTTTTTGGAAAGCCTCCAAGATGGTTCAGCTATGCTGAGTTGGAGCTTGCCACTGGTGGATTTTCACAAGCCAATTTCTTGGCAGAAGGAGGATTTGGATCTGTTCACAGAGGGGTTCTACCAGATGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAGGGTGATGTTGAATTTTGCTCGGAGGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTGGTTATGTTGATTGGGTTCTGTATAGAGGATAAGAGAAGGCTACTGGTTTATGAGTACATATGTAATGGATCATTGGATTCTCATTTATATGGGAGACAACGGAAACCATTAGAATGGTCCGCACGGCAAAAAGTCGCTGTTGGAGCTGCTCGAGGGTTGAGATATCTTCATGAAGAGTGCAGGGTGGGTTGCATTATCCACCGTGACATGAGGCCTAACAACATTCTCATCACTCATGATTTTGAACCACTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACACAGGAGTGGAAACTAGAGTAATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGTGGCCAAATAACTGAAAAGGCTGATGTTTATTCCTTTGGGGTGGTATTAGTGGAGCTTGTTACAGGGCGAAAAGCTGTGGATCTCAATCGACCCAAGGGACAACAGTGTCTTACTGAGTGGGCACGGCCACTGTTAGAAGAATATGCCATTGAGGAGCTGATTGATCCAAGGATGGGAAGTCACTACTCAGAGCATGAGGTCTCTTGCATGCTACATGCTGCATCATTATGCTTAAGGCGAGATCCTTATTGTAGACCACGCATGTCACAGGTTCTTCGAATACTAGAGGGTGACATGGTCATGGACTCAAATTGCATTTCAACTCCTGGTTATGATGTGGGCAACCGGAGTGGTTGA 2094 0.4417 MSREQQKRGKQEKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPPQSSGRRLWGFPRFAGDCANSHKKSTPGTTSSEQKNDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPCGSVATEAKKAQANWVVLDKQLKHEEKQCMEELQCNIVAMKRSQPKVLRLNLVGSKNKDLEEACPLPSDQGEMPGKQTKKKNDTLNSIKGPVVTPTSSPELGTPFTATEAGTSSVSSSDPGTSPFFISEMNAESKKEETIKENQELDDTISDTDSEHLSSSSASLRFQPWITDLLLHQQSSQHTEERSERSHNRLQSSTTRALLEKFSRLDREAEIEISNYKTDLDFGGNVRDAIALSRNAPPGPPPLCSVCQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPDGQVIAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQRKPLEWSARQKVAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIEELIDPRMGSHYSEHEVSCMLHAASLCLRRDPYCRPRMSQVLRILEGDMVMDSNCISTPGYDVGNRSG. 698
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08773 697 MobiDBLite consensus disorder prediction 304 324 - -
Seca4g08773 697 PANTHER OS01G0750732 PROTEIN 154 681 - -
Seca4g08773 697 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 480 683 - -
Seca4g08773 697 MobiDBLite consensus disorder prediction 188 287 - -
Seca4g08773 697 Gene3D Transferase(Phosphotransferase) domain 1 480 685 - -
Seca4g08773 697 SUPERFAMILY Protein kinase-like (PK-like) 388 678 IPR011009 -
Seca4g08773 697 Gene3D Phosphorylase Kinase; domain 1 375 479 - -
Seca4g08773 697 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 376 479 - -
Seca4g08773 697 ProSiteProfiles Protein kinase domain profile. 404 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08773 697 MobiDBLite consensus disorder prediction 306 320 - -
Seca4g08773 697 MobiDBLite consensus disorder prediction 257 280 - -
Seca4g08773 697 Coils Coil 255 275 - -
Seca4g08773 697 FunFam Dual-specific kinase DSK1-like 12 167 - -
Seca4g08773 697 ProSitePatterns Tyrosine protein kinases specific active-site signature. 525 537 IPR008266 GO:0004672|GO:0006468
Seca4g08773 697 MobiDBLite consensus disorder prediction 210 255 - -
Seca4g08773 697 CDD STKc_IRAK 410 676 - -
Seca4g08773 697 Pfam Protein kinase domain 408 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca4g08773 Seca-Chr4 209239640 209245753 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08773 384 693 Trihelix Transcription Factor Family AT1G70460 51.562 4.99e-101 323
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca4g08773 Pkinase 1e-40 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08773 - - gmx:100789216 1289.63