Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08763 ATGCAAGACCCAACGGTATTCCAATCCATCCAACCCCAATTTCCTGAACAAGAACAACTTAAATGCCCACGTTGTGATTCCACAAACACCAAATTCTGCTACTACAACAACTACAACCTCTCGCAGCCACGCCATTTTTGCAAGAATTGCAGAAGGTATTGGACCAAAGGAGGTACTCTGAGAAACATCCCTGTTGGTGGTGGAAGCCGAAAGAACACAAAACGATCATCCACTAACTCCAAACGCTCTGCATCATCATCTTCCCCATCACCTTCAGTTTCCTCTGCAGCCCATGCTACAGCTCCAGAATCTGACCCGACCCGGATTTACAACAACCCGGTTGGTCAAGACCAGAGGTTACCTATCGTTGGTGGGAGTTTCAGTTCCCTTCTGGCATCAACTGGGCATTTGGGGAACCTGTTGGAAGGTCTGAATTCAAGTGGGTCAAATCTAAAAATGGTGCAAATAGAAGAATTTAGGGAGAATGCCGGTTCTGTCTCACTGGTGAATCCGGATTCGGGTAGGAATCCCGGGTTGAAGATGCAGAGCAATGCAGAGAGCTTTCTGAGTATGCAAAATGGTGATTCAAGCTGTTGGAATGGTAGTAGTAATGGGTGGTCTAACCTTGCAATATACACTCCTGGGTCAAGCTTTCAGTAG 660 0.4667 MQDPTVFQSIQPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGTLRNIPVGGGSRKNTKRSSTNSKRSASSSSPSPSVSSAAHATAPESDPTRIYNNPVGQDQRLPIVGGSFSSLLASTGHLGNLLEGLNSSGSNLKMVQIEEFRENAGSVSLVNPDSGRNPGLKMQSNAESFLSMQNGDSSCWNGSSNGWSNLAIYTPGSSFQ. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08763 219 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 169 IPR045174 GO:0003700|GO:0006355
Seca4g08763 219 MobiDBLite consensus disorder prediction 69 114 - -
Seca4g08763 219 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Seca4g08763 219 MobiDBLite consensus disorder prediction 61 116 - -
Seca4g08763 219 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Seca4g08763 219 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08763 Seca-Chr4 208539709 208540368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08763 5 141 C2C2-Dof Transcription Factor Family AT1G51700 58.219 1.49e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca4g08763 zf-Dof 2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08763 - - gmx:100798927 273.863