Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08754 TCCACAACAAGCGAAGGTGAAAACGTAGAAGAAGAAAGAGATGGCCACAGTCCCAGGACAACTCGTTTGGGAGATCGTGAAGAGGAACAACTCTTTCTTGGTGAAAGAGTTTGGCAGGGGAACCCAGAGTGTCCAGTTCAGCAAAGAACCCAACAATCTCTTCAACCTCAACTCTTTCAAGTACTCTGCTCACTTAATGTTTATGCTGGTATGATAGGTTTGGCAAACAAGAAAACTGTTACTATTCAGCCTGCGGGTAAAGACCAGTCTGTAGTGTTGGCAACGACCAAGACAAAGAAGCAAAACAAGCCTGCAGCTTTGCTTCACAAATCTGTCATGAAGAAGGAGTTCCGAAGGATGGCAAAGGCTGTGCAAAATCAGGTATCAGATAACTACTACAGGCCTGATCTCAAGAAGGCAGCTCTTGCAAGGTTGAGTGCTGTCAATAGGAGCCTCAAAGTCGCTAAGTCTGGTGTGAAGAAGAGAAACCGACAGGCTGTGAGGGTCTCTGGTAGGAAGTGA 522 0.4617 STTSEGENVEEERDGHSPRTTRLGDREEEQLFLGERVWQGNPECPVQQRTQQSLQPQLFQVLCSLNVYAGMIGLANKKTVTIQPAGKDQSVVLATTKTKKQNKPAALLHKSVMKKEFRRMAKAVQNQVSDNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQAVRVSGRK. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08754 173 PANTHER 60S RIBOSOMAL PROTEIN L28 71 173 IPR002672 GO:0003735|GO:0005840|GO:0006412
Seca4g08754 173 Gene3D - 63 156 - -
Seca4g08754 173 MobiDBLite consensus disorder prediction 1 27 - -
Seca4g08754 173 Pfam Ribosomal L28e protein family 72 151 IPR029004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08754 Seca-Chr4 208431363 208434697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08754 73 166 Cytoplasmic Ribosomal Protein Gene Family AT2G19730 77.660 2.00e-45 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08754 K02903 - gmx:100500189 183.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08754 4 208431363 208434697 Seca4g11805 4 258607899 258610474 ECH
Seca4g08754 4 208431363 208434697 Seca4g08754 4 208431363 208434697 ECH
Seca4g11805 4 258607899 258610474 Seca4g08754 4 208431363 208434697 PCT