Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08744 ATGGAGGGTCTGAGTTGGGATGTATCACAACTTGTTGCAAACATACCAATCTTGTGGAGCACACAGCCACAAGACCTTGAAGAAGACTACAACATGCCCAACCTAAGTTCAAGTGTTCTTGATCAAACAGGCCAGCTATATTCCATTTCTGAAAAAGTGAGTGATATGGTTCAATCAATAATATCTGCCCCCACCTCTGAGATAATGAGTATGATGCCAAACACAAATCTGTCACAGAGAACAGAAGCCATGTCTGTGAAATCAGGATCAGGAGCTGTAACCAGTTGGGAAGAAGCTTTAACAATATCTCAATCATGCCAGTCCCTTTCAGTCAATTTGAACCCAACTAGCAATTATGTGCCAGATTTCAACATGGCCCACCAGCAACAACAACAACAACAACTTATCAACAGCACACAAAACATCAAGGCTACCTGCTCTCTTGAATCACTTGATTGCTTGCTTTCAGCCACTAATAGTAACACTGACACATCTGTTGAAGATGATGGGATTTCCATGATTTTATCTGACTGCAGAAACTTATGGAACTTCAGTTATGGAAGTGCAGTTTCCTCTGGTGAATCTGATAGTAATGCTTCCAATGCTAGAAACAAAGACATACTGGATGAAACGGCATCTCAAAGTTCCTCTGATCAAGGTAAAATTATAGATTCTAATGTTCATTGCAAAAATAGGAATAATGAGGTGATCAGAGTTCCTGCAAGTGATCATCACTACTTCAGTATTGCTCAAAATTCTGATTCAGTTACTGAAGGTGGTTTTAAGCTTATCTCAGAGAATCCACCAAAATCCAAGAAACCCAGATGGGATAAGCTTCCTGGTTCATCAAACATCAATTTTCAGCAACCAAATTCATCTGTTTCACCTTCTTTTGAAGAGCCTGATCCAGAGGCCATAGCACAGATGAAGGAAATGATATATAGAGCTGCAGCTTTTAGGCCAGTGAACTTGGGCTTGGAAGTGGTGGAAAAGCCAAAAAGGAAGAATGTGAGGATATCAAATGATCCACAAACTGTGGCTGCAAGGCAAAGGAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAATTACCTCAAGTTTCTCAGGTCACAAGTCAAAGCATTAGAAAATCTAGGGAACAACCTTAACACAATGAATTGTCCTCCTACTAGCATAGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAAACAATTTCCCTATTCAAAACCCTAGCAGCCACATCCAACATTCTTGGGGTTGA 1323 0.4089 MEGLSWDVSQLVANIPILWSTQPQDLEEDYNMPNLSSSVLDQTGQLYSISEKVSDMVQSIISAPTSEIMSMMPNTNLSQRTEAMSVKSGSGAVTSWEEALTISQSCQSLSVNLNPTSNYVPDFNMAHQQQQQQQLINSTQNIKATCSLESLDCLLSATNSNTDTSVEDDGISMILSDCRNLWNFSYGSAVSSGESDSNASNARNKDILDETASQSSSDQGKIIDSNVHCKNRNNEVIRVPASDHHYFSIAQNSDSVTEGGFKLISENPPKSKKPRWDKLPGSSNINFQQPNSSVSPSFEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISNDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNNLNTMNCPPTSIAFSFNPSFPMQNNFPIQNPSSHIQHSWG. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08744 440 SMART finulus 345 394 IPR011598 GO:0046983
Seca4g08744 440 Pfam Helix-loop-helix DNA-binding domain 349 388 IPR011598 GO:0046983
Seca4g08744 440 MobiDBLite consensus disorder prediction 260 301 - -
Seca4g08744 440 MobiDBLite consensus disorder prediction 281 298 - -
Seca4g08744 440 Gene3D - 344 407 IPR036638 GO:0046983
Seca4g08744 440 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 388 IPR011598 GO:0046983
Seca4g08744 440 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 158 437 IPR045843 GO:0003700|GO:0006355
Seca4g08744 440 Coils Coil 378 398 - -
Seca4g08744 440 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 404 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08744 Seca-Chr4 208226487 208227809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08744 111 437 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 50.448 4.45e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g08744 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08744 - - gmx:100793830 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08744 4 208226487 208227809 Seca4g08744 4 208226487 208227809 ECH
Seca4g11815 4 258702369 258704380 Seca4g08744 4 208226487 208227809 PCT