Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08743 ATGGAAATTATGATGGCAAAGACTCTCTTCCTGAATTTGATATCTATCTTGGAGCTAAATGGTGGGAAACGGTGGGAAACGGTGGTGTTTGAGGATGCATCCACTGTAATAACCAAGGAAATCATTTATGCTGCTTCATCAGATTATGTCCATGTTTGCCTATTTAACACCAACAATGGTACACCTTTTATTTCAGTTTTAGAGCTTAGAGTTCTTAACAGTGATGCCTATCTAGTAAACTCTCTGGAGCTGTTAGCGCGTTTTGATGTAGGCTTACAGAATGGTGGAATAATTAGATATCCAGATGATAACTATGACAGAATGTGGACACCTTATAACTCAATTGACTGGAAAAAGATAGATACAACACTCACCATAGACAAGGGAGCACCTTCATTCAATTTTTTACCATTACCACCCTCCATGGTCACTAGAACAGCAGCAATTCCAGCTAATGTCAGCAACAATATAGAGTTCTACTTCCTTCCCAAATATAATGCCTCTACATATTATATATACTTCTACTTTGCTGAAATCCAGAAGCACCAAGCAAATCAAATTAGAGAGTTCAACATTTTTGTAAATGGGGAGCTTTTTAATAATGCACCAGTCAATCCTGTATACCTGCAGAGTCTGTATTATGTGTCAGCTATAAGTGAACCTCGGTTGGAACTTTGGATTAATAAAACTAGTAGATCAACTCTTCCGCCTCTCCTCAATGCCATTGAGATATATATGACAAAGGACTTCTTACAATCAGAAACACATCAAACAGATGTTGATGCTATCATAAATGTCAAGTCAATTTATGGGATCAAGAGAAACTGGCAAGGAGATCCTTGTATTCCAGTGGCTTACTTGTGGGATGGTCTTAACTGCAGCTATGCTGGATCTGGTTCACCAAGGATCATATACTTGAACTTATCTTCCAGTGGTTTGATTGGAAATATAGCTCCTGGCATATCCAATCTGAAATCAATAGAATATTTGGATTTGTCAAACAACAGTTTAACTGGGGCTGTGCCTGATTTCCTATCCCAGCTGCGTTTCTTGAGAGTTTTAAACCTGGAAGGAAATCGGCTATCAGGAACAATTCCAATGCAACTCACTGTGCGTTCAGAGAATGGTTTGCTTGAATCCAATTTTGGTGAAAATCCAAATCTTTGCTCTCCAGGTTCATGCAATAATGGGAATGGGAATAAGTTTGTAGTTCCACTGGTGGCATCGCTTGGTGGAGCTTTCATGATACTGGCAGTCGCAGTGATTTTTTTCCAAATATACAACAGGAGACAAGCAGTTTCCCCTCATTCAAGCACAGTGCGTATTTATTCTAGAATAAAGGAGGAATTAGAGTCAAATAAACAAGAATTCACCTATGCTGAAGTATTGAGAATGACCAAAAACTTTGAAAAGGTTGTGGGCAAAGGAGGATTTGCAATAGTTTACCATGGTTTTGTAGATGATATTGAGGTAGCTGTCAAAATGCTCTCTCCTTCAGCTCAAGGTTATCTGCAATTTCAGGCGGAGGCCAAACTGCTTGCTATAGTTCATCATAAATGTATGACTGATCTTATAGGATATTGTGATGATGGTTCCAACATGGCTCTCATTTATGAGTATATGGCAAATGGAGACTTAGCGAAGCATTTATCAGAAAAAAGTGAAAATATATTGGGTTGGAATCAACGACTTCAAATTGTAGTGGATGTTGCAGAAGGATTGGAGTATTTGCACCATGGCTGCAACCCACCAATTGTTCATAGAGATATTAAATCTAAAAACATCTTACTAAATGAGAAATTCAAGGGTAAACTAGCTGATTTTGGGTTATCAAAGATCTTTCCTAATGAAGGTGACACCCATATCTCCACTGTGGTTGCTGGTACCCCCGGATATCTTGACCCAGAGTACAATAAATTAAAAAAGTTAAATGAAAAAAGTGACGTTTTTAGTTTTGGAGTAGTTTTGCTCGAGATAATTACGGGTCAACCTGCTATAAGAAAAACTGAAGAGAAAACTCATATAATTGAATGGGTTTATTCCATGATACTCGAGAAGGAGGTCAAAGATATTGTGGATTCTAGATTGCAAGGAGACTTGGATATTGATTCTGCAAAGAAAGCCTTAGATATTGCAATGGCTTGTGTAGCACCCACTTCCATTAATAGGCCAACCATGAGCTATGTAGTGATGGAATTGAAACAATGTTTAGCAAATAAGATGATCGATCCATCTGAATTTGACAATCATGAAAGTGTATCGGGCAACTTAACCACTATCTCCTTTGATAGAATAAGTGGAGAGAGCTCTCTTGAAAGGTAG 2322 0.3816 MEIMMAKTLFLNLISILELNGGKRWETVVFEDASTVITKEIIYAASSDYVHVCLFNTNNGTPFISVLELRVLNSDAYLVNSLELLARFDVGLQNGGIIRYPDDNYDRMWTPYNSIDWKKIDTTLTIDKGAPSFNFLPLPPSMVTRTAAIPANVSNNIEFYFLPKYNASTYYIYFYFAEIQKHQANQIREFNIFVNGELFNNAPVNPVYLQSLYYVSAISEPRLELWINKTSRSTLPPLLNAIEIYMTKDFLQSETHQTDVDAIINVKSIYGIKRNWQGDPCIPVAYLWDGLNCSYAGSGSPRIIYLNLSSSGLIGNIAPGISNLKSIEYLDLSNNSLTGAVPDFLSQLRFLRVLNLEGNRLSGTIPMQLTVRSENGLLESNFGENPNLCSPGSCNNGNGNKFVVPLVASLGGAFMILAVAVIFFQIYNRRQAVSPHSSTVRIYSRIKEELESNKQEFTYAEVLRMTKNFEKVVGKGGFAIVYHGFVDDIEVAVKMLSPSAQGYLQFQAEAKLLAIVHHKCMTDLIGYCDDGSNMALIYEYMANGDLAKHLSEKSENILGWNQRLQIVVDVAEGLEYLHHGCNPPIVHRDIKSKNILLNEKFKGKLADFGLSKIFPNEGDTHISTVVAGTPGYLDPEYNKLKKLNEKSDVFSFGVVLLEIITGQPAIRKTEEKTHIIEWVYSMILEKEVKDIVDSRLQGDLDIDSAKKALDIAMACVAPTSINRPTMSYVVMELKQCLANKMIDPSEFDNHESVSGNLTTISFDRISGESSLER. 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08743 773 SMART serkin_6 467 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08743 773 SUPERFAMILY Protein kinase-like (PK-like) 451 733 IPR011009 -
Seca4g08743 773 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 541 745 - -
Seca4g08743 773 PANTHER OS07G0107800 PROTEIN-RELATED 21 737 - -
Seca4g08743 773 Gene3D Transferase(Phosphotransferase) domain 1 541 755 - -
Seca4g08743 773 SUPERFAMILY L domain-like 263 369 - -
Seca4g08743 773 Pfam Leucine rich repeat 305 361 IPR001611 GO:0005515
Seca4g08743 773 Pfam Protein tyrosine and serine/threonine kinase 469 733 IPR001245 GO:0004672|GO:0006468
Seca4g08743 773 FunFam Leucine-rich repeat receptor-like kinase 258 390 - -
Seca4g08743 773 ProSitePatterns Protein kinases ATP-binding region signature. 473 494 IPR017441 GO:0005524
Seca4g08743 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 585 597 IPR008271 GO:0004672|GO:0006468
Seca4g08743 773 ProSiteProfiles Protein kinase domain profile. 467 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08743 773 Gene3D Phosphorylase Kinase; domain 1 449 540 - -
Seca4g08743 773 Gene3D Ribonuclease Inhibitor 261 379 IPR032675 -
Seca4g08743 773 Pfam Malectin-like domain 20 246 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08743 Seca-Chr4 208176089 208186653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08743 25 738 Receptor kinase-like Gene Family AT2G19210 47.245 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Seca4g08743 PK_Tyr_Ser-Thr 6.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08743 - - psat:127087401 1175.61