Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08730 ATGGCGAAATCAAGCTCAACCACGATAACATTCAAACCAACATGGGTTCTTTCGTACCGTACCCAACACATAACAGAGGTGTACACGATGGGTAGAAAATTGGGTCAGGGTCAATTTGGGACAACGTACCTTTGCACTCACAAGGTAACGGGTGGTAGGTACGCTTGCAAGTCTATTCCAAAATGGAAGCTTCTGTGCAAAGAGGATTACGACGACGTTTGGAGGGAGATTCAGATAATGCACCACTTGTCTGAACACCCTCATGTGGTGCAAATCGAAGGAACTTATGAGGATTCCTCTATTGTTCACATGGTTATCGAGCTATGTGAAGGAGGAAAGATATTTGACAGGATCGTGCAGAAGGGTCGCTACAGTGAGAGACAAGTTGTGAAGTTGAAAAAGACTATTGTTGAGGTTATGGAGTCTTGTCACTCTCTTGGGTTTATGTATAGAGACCTTAAGCCTGAGAACTTTCTCTTTGATACTGTTGATGAGGATGCTAAACTCAAAGCCACCTTTTTGTTATGCTTCTTCACAAAATCAGCAGCTTAA 552 0.4293 MAKSSSTTITFKPTWVLSYRTQHITEVYTMGRKLGQGQFGTTYLCTHKVTGGRYACKSIPKWKLLCKEDYDDVWREIQIMHHLSEHPHVVQIEGTYEDSSIVHMVIELCEGGKIFDRIVQKGRYSERQVVKLKKTIVEVMESCHSLGFMYRDLKPENFLFDTVDEDAKLKATFLLCFFTKSAA. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08730 183 FunFam Calcium-dependent protein kinase 1 30 113 - -
Seca4g08730 183 ProSiteProfiles Protein kinase domain profile. 28 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08730 183 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 172 - -
Seca4g08730 183 SUPERFAMILY Protein kinase-like (PK-like) 6 161 IPR011009 -
Seca4g08730 183 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Seca4g08730 183 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Seca4g08730 183 SMART serkin_6 28 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08730 183 Pfam Protein kinase domain 28 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08730 183 Gene3D Transferase(Phosphotransferase) domain 1 19 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08730 Seca-Chr4 207899184 207899735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08730 16 182 EF-hand Containing Proteins AT1G35670 68.452 9.71e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca4g08730 Pkinase 1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08730 K13412 - lja:Lj4g3v2860560.1 288.5