Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08726 ATGGGGAAAGCTACCAGGTGGTTGAAGGGGTTGTTGGGAATGAAGAAAGAGAAGGACCACTGTGACAAATCAGGCTCATTGGCTCAGGGCAAGAAGGAGAAGAAAGGGTCAGGGGAGGATGAACAGAGTCACATTACTTTCAGAGCCTATGTTGCTGAAAAAGAGGATGAACAGAACAAACACACAATTGCTGTGAGATCATTAAGCCATGGAAGAGGCACATTTTTTAGAGTAAGCAGGGAAAGGTGGGCTGCTCTAAAGATCCAAACTTTGTTCAGAGGCTATTTGGCACGAAAGGCTCTTAGAGCACTCAAAGCATTGGTTAAGATACAGGCTCTTGTTAGAGGGTATCTAGTTCGAAAAAGGGTTGCTGCAACTCTTCACAGTATGCAAGCTCTGATGAGAGCTCAATCCACTGTCCGGTCACAGAGAGCTCGTCGTTCCATCAACAAGGAGAATACATTTCCAAGAAAATATGTGGTAATTAAAAACTGGCAACTGTTTGATGAAACAAGAAATGAATCACAAAGTAAAGGGCTGCCCACATCTTATGATACATCCTTGAATGGATTTGTTCAGAGTCCAAAAGTTGTTATGATTGACACTCAAAGTCACAGGACCTGTTCAAGGTCTAGGTGCATTACCACTACAAATACAATGTCTGAATGTGGAGAAGATTTGCACTATCAAGCAATGTCATCATCACCCTCTCTTACTTATCAAGTTCCTGGTCGAATCTCAGTTCATGAATGCCAACATCCTCAAGATTTTGAATGGTACTTCAATGTTGATGAACGCAAATTCTCCACAGCTCAGAACACACCTCGTTTAGCAAATTGTGGAGATACCTTCTTCCAGAATTACTCCAATTTTCCTAGTTACATGGCCAATACTCAATCATCTAAGGCAAAATTAAGGTCTCATAGTGCTCCAAAGCAAAGACCTGAGCCCAAGAAAAGGTTTCCACTCAATGAAATAATGGCCACTAGAAATAGCATAAGTGGTGTTAGAATGCAGTGGTCATCCAATTCTCAAACTAGAGATTACTCTTGTTTTGACAGGGTTTGA 1068 0.4157 MGKATRWLKGLLGMKKEKDHCDKSGSLAQGKKEKKGSGEDEQSHITFRAYVAEKEDEQNKHTIAVRSLSHGRGTFFRVSRERWAALKIQTLFRGYLARKALRALKALVKIQALVRGYLVRKRVAATLHSMQALMRAQSTVRSQRARRSINKENTFPRKYVVIKNWQLFDETRNESQSKGLPTSYDTSLNGFVQSPKVVMIDTQSHRTCSRSRCITTTNTMSECGEDLHYQAMSSSPSLTYQVPGRISVHECQHPQDFEWYFNVDERKFSTAQNTPRLANCGDTFFQNYSNFPSYMANTQSSKAKLRSHSAPKQRPEPKKRFPLNEIMATRNSISGVRMQWSSNSQTRDYSCFDRV. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08726 355 SMART iq_5 80 102 IPR000048 GO:0005515
Seca4g08726 355 SMART iq_5 103 124 IPR000048 GO:0005515
Seca4g08726 355 ProSiteProfiles IQ motif profile. 105 132 IPR000048 GO:0005515
Seca4g08726 355 MobiDBLite consensus disorder prediction 299 320 - -
Seca4g08726 355 ProSiteProfiles IQ motif profile. 81 109 IPR000048 GO:0005515
Seca4g08726 355 Pfam IQ calmodulin-binding motif 105 122 IPR000048 GO:0005515
Seca4g08726 355 Pfam IQ calmodulin-binding motif 82 102 IPR000048 GO:0005515
Seca4g08726 355 Gene3D - 42 105 - -
Seca4g08726 355 Gene3D - 106 154 - -
Seca4g08726 355 PANTHER IQ-DOMAIN 5-RELATED 1 331 - -
Seca4g08726 355 Pfam Protein of unknown function (DUF4005) 267 334 IPR025064 -
Seca4g08726 355 MobiDBLite consensus disorder prediction 16 42 - -
Seca4g08726 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 124 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08726 Seca-Chr4 207846791 207849522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08726 1 338 IQD Protein Family AT3G16490 44.020 2.15e-79 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08726 - - gmx:100797686 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08726 4 207846791 207849522 Seca4g08726 4 207846791 207849522 ECH
Seca4g11845 4 259125171 259128934 Seca4g08726 4 207846791 207849522 PCT