Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08722 ATGATGGATGAAAGGTCAAGAAATGAGGTTTCTCCTCAGCTGCTGGATTTGATTTCAAATGAGAAGAGAGAGTGGCACATGAACAAAGGTGAAGGAAAAGGAAAGTCTTCAGAGGAGAAGAAGCTTGAGCTGAGGCTTGGTCCACCTGGTGAGGATTGGTCTGAAAGAGATGAGTCTCTACTCTCTCTTGGTTACCTCTCTACCACCAAGCTTCATGCAAAAATGAGCTCCAACAATGGGTTCCAAACCAAGAATATTCCAAACCCTGACACCCCAGCTGGGGCTATGTTACCCTCTCCATGGCCCTCCACAGGGTACCACCAACAGGGCAATAATAAAGCTTCATCATTTCTTCAGTTCCCATCAACCCCACCTGTGATGGGTAAGGATTCTGCATCACAAACCTGTTGCCCTAAGGTGGTAGAGTTGCAGAATGGTGATAAGAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGCCTAACAGCTCTCAGAAAAGAACTGCTCCTGGTCCAGTTGTGGGTTGGCCTCCAATTCGTTCGTTCAGGAAGAACCTTACTAGCAGCACCTCTTCTAAGCCATCACCACCTGAGTCCCAATCTCCTCAGCATAACAAGGTTGCTGGTAAAAAACCTATTGACAATTATGGTAAAGGTTTGTTTGTTAAGATCAACATGGATGGAGTCCCAATTGGGAGAAAAGTGGACCTTAATGCTTACGACAGCTATGAAAATCTTTCTTCTGCAGTGGATGAGCTCTTTAGAGGCCTCCTTGCAGCTCAACGAGATTCCTCTGCTGGTGGAGTGAACAACAACCAAGAGGAAGAGAAACCGATTACAGGTTTATTGGATGGTAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAGTAA 930 0.457 MMDERSRNEVSPQLLDLISNEKREWHMNKGEGKGKSSEEKKLELRLGPPGEDWSERDESLLSLGYLSTTKLHAKMSSNNGFQTKNIPNPDTPAGAMLPSPWPSTGYHQQGNNKASSFLQFPSTPPVMGKDSASQTCCPKVVELQNGDKKVFSPSSANTAVPNSSQKRTAPGPVVGWPPIRSFRKNLTSSTSSKPSPPESQSPQHNKVAGKKPIDNYGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVNNNQEEEKPITGLLDGSGEYTLVYEDNEGDRMLVGDVPWQ. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08722 309 SUPERFAMILY CAD & PB1 domains 215 309 - -
Seca4g08722 309 MobiDBLite consensus disorder prediction 19 56 - -
Seca4g08722 309 Gene3D - 214 309 - -
Seca4g08722 309 MobiDBLite consensus disorder prediction 182 206 - -
Seca4g08722 309 ProSiteProfiles PB1 domain profile. 219 309 IPR000270 GO:0005515
Seca4g08722 309 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 39 308 IPR003311 GO:0005634|GO:0006355
Seca4g08722 309 MobiDBLite consensus disorder prediction 1 56 - -
Seca4g08722 309 MobiDBLite consensus disorder prediction 102 130 - -
Seca4g08722 309 MobiDBLite consensus disorder prediction 264 283 - -
Seca4g08722 309 MobiDBLite consensus disorder prediction 148 169 - -
Seca4g08722 309 MobiDBLite consensus disorder prediction 77 212 - -
Seca4g08722 309 FunFam Auxin-responsive protein 214 309 - -
Seca4g08722 309 Pfam AUX/IAA family 42 309 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08722 Seca-Chr4 207736260 207740676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08722 195 308 B3 DNA Binding Superfamily AT4G23980 32.456 3.21e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca4g08722 AUX_IAA 8e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08722 K14484 - gmx:100804593 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08722 4 207736260 207740676 Seca4g11851 4 259173236 259175959 ECH
Seca4g08722 4 207736260 207740676 Seca4g08722 4 207736260 207740676 ECH
Seca4g11851 4 259173236 259175959 Seca4g08722 4 207736260 207740676 PCT